Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

7 accessions found for Rhizobium leguminosarum bv. viciae 3841  

Data for AM236084  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236084.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236084_0289 CDS_301054-302343 58.6 3.4e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236084_0289 1/1 200 263 .. 1 87 [] 58.6 3.4e-17

Alignments of top-scoring domains:
AM236084_0289: domain 1 of 1, from 200 to 263: score 58.6, E = 3.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELR PL+ +++++ +L+ s+ ++
AM236084_0 200 AQQRLFHDVSHELRSPLSRLQAAVGVLRQ------------SPAKL- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++++re+erl++L+ ++L+l+r+ ag
AM236084_0 234 ----------AAMLDRMDREVERLDALVGEVLTLARLTAG 263


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 1 0|=
-13 2 0|=
-12 13 10|====*==
-11 37 52|=================== *
-10 89 97|============================================= *
-9 85 100|=========================================== *
-8 76 75|=====================================*
-7 64 47|=======================*========
-6 33 27|=============*===
-5 18 14|======*==
-4 9 8|===*=
-3 5 4|=*=
-2 4 2|*=
-1 1 1|*
0 2 0|=
> 1 3 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 16.2096
P(chi-square) = 0.03948

Total sequences searched: 471

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: