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Firmicutes Fusobacteria Gammaproteobacteria
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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Rhizobium leguminosarum bv. viciae 3841  

Data for AM236085  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236085.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236085_0389 CDS_410109-407401 78.2 1.3e-22 1
AM236085_0037 CDS_46607-48535 35.2 1.9e-10 1
AM236085_0228 CDS_237389-239269 32.1 1.5e-09 2
AM236085_0318 CDS_345638-343053 31.2 2.7e-09 1
AM236085_0545 CDS_577593-576214 30.5 4.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236085_0389 1/1 669 737 .. 1 87 [] 78.2 1.3e-22
AM236085_0037 1/1 281 347 .. 1 87 [] 35.2 1.9e-10
AM236085_0318 1/1 349 415 .. 1 87 [] 31.2 2.7e-09
AM236085_0228 2/2 397 467 .. 1 87 [] 31.0 3.1e-09
AM236085_0545 1/1 242 300 .. 1 87 [] 30.5 4.3e-09

Alignments of top-scoring domains:
AM236085_0389: domain 1 of 1, from 669 to 737: score 78.2, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l ++sH+L+TPL+aI+g+a +L++++ + ++ee+r
AM236085_0 669 LRSALLTSISHDLKTPLAAILGAAGTLRDYF-------ASMPEEDR- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t+ +e+erl+r i +lLd+++ie+g
AM236085_0 708 ----------SDLLSTVVDESERLNRFIANLLDMTKIESG 737

AM236085_0037: domain 1 of 1, from 281 to 347: score 35.2, E = 1.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L a++g +e+L++ + +++
AM236085_0 281 AIGQLTGGIAHDFNNLLMAVLGSLEILKK--------RMPQDLSL-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + a+r +L +++L +sr ++
AM236085_0 318 ----------TSLVDNAMQGAQRGAALTQRMLAFSRRQEL 347

AM236085_0318: domain 1 of 1, from 349 to 415: score 31.2, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L +I+g+++lL + + +++
AM236085_0 349 SIGKLTGGVAHDFNNLLQVISGNLQLLGK---------DVADSGRG- 385

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +l ++er +rL ++lL + r +
AM236085_0 386 ----------KERISNALAAVERGSRLASQLLAFGRRQPL 415

AM236085_0228: domain 2 of 2, from 397 to 467: score 31.0, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++HEL++PL+aIr +ae++ l+++++ + e +
AM236085_0 397 TAGALSSSIAHELNQPLSAIRNNAEAASV-----LLRSEKPDHELI- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+++ +r ++i++++ l + +++
AM236085_0 438 ----------QQILLDIQEDDQRAGDIISRMRGLLKKRNE 467

AM236085_0545: domain 1 of 1, from 242 to 300: score 30.5, E = 4.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl +++HELRTP++ + + + L
AM236085_0 242 RQERFLTDAAHELRTPIAILNTRIGSLPH------------------ 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++a rl L +++Ldl r+ +g
AM236085_0 271 ----------SSIKTDLLEDAARLAVLTEQMLDLQRLKQG 300


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 1 0|=
-13 4 0|==
-12 25 14|====*====
-11 76 75|========================*=
-10 93 139|=============================== *
-9 130 143|============================================ *
-8 112 107|===================================*==
-7 75 67|======================*==
-6 62 39|============*========
-5 24 21|======*=
-4 9 11|===*
-3 5 6|=*
-2 6 3|*=
-1 5 1|*=
0 1 0|=
1 0 0|
> 2 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 39.7861
P(chi-square) = 8.307e-06

Total sequences searched: 644

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: