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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

7 accessions found for Rhizobium leguminosarum bv. viciae 3841  

Data for AM236086  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM236086.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM236086_0713 CDS_780436-786735 79.0 9.1e-23 2
AM236086_0663 CDS_719348-720724 56.3 2.5e-16 1
AM236086_0787 CDS_866602-862967 39.6 1.4e-11 1
AM236086_0714 CDS_786746-788422 34.3 4.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM236086_0713 1/2 1424 1492 .. 1 87 [] 78.6 1.2e-22
AM236086_0663 1/1 240 305 .. 1 87 [] 56.3 2.5e-16
AM236086_0787 1/1 988 1058 .. 1 87 [] 39.6 1.4e-11
AM236086_0714 1/1 189 255 .. 1 87 [] 34.3 4.4e-10

Alignments of top-scoring domains:
AM236086_0713: domain 1 of 2, from 1424 to 1492: score 78.6, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ + + L e d++ls +q
AM236086_0 1424 YKSEFLANMSHELRTPLNSILILGQQLGE------NPDGNLSGKQ-- 1462

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti+ ++ ll+Li+d+Ldls+ie+g
AM236086_0 1463 ----------VEFAKTIHGAGTDLLNLISDILDLSKIESG 1492

AM236086_0663: domain 1 of 1, from 240 to 305: score 56.3, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n++H+LRTPL+ I++ a+++ + e+++ r
AM236086_0 240 AQRRFVSNAAHQLRTPLALISTQASVAAR----------EADAARR- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ ++++++rL ++lL+lsr+e g
AM236086_0 276 ----------DEALFALRTSTKQISRLASQLLTLSRAEPG 305

AM236086_0787: domain 1 of 1, from 988 to 1058: score 39.6, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ e+ a+++HE ++PL+a+ +++++++++l +e + +r+
AM236086_0 988 SLAELSASIAHEVNQPLAAVVANSHACQRWLM------AEPPNMERA 1028

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+r+a++ + +++++ l + a
AM236086_0 1029 ----------QRTVERIIRDANSAADVVSRIRALFKQSAD 1058

AM236086_0714: domain 1 of 1, from 189 to 255: score 34.3, E = 4.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H++++ L a++g + lL++ + +++e
AM236086_0 189 TIGHLTGGVAHDFNNLLMAVLGSLNLLKK--------RLPADERS-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++aer +L ++lL ++r ++
AM236086_0 226 ----------ERLVTNAIQAAERGTALTQRLLAFARRQEL 255


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 1 0|=
-13 3 0|=
-12 17 17|=====*
-11 59 92|==================== *
-10 140 171|=============================================== *
-9 176 177|==========================================================*
-8 143 132|===========================================*====
-7 109 83|===========================*=========
-6 61 48|===============*=====
-5 32 26|========*==
-4 19 14|====*==
-3 7 7|==*
-2 4 3|*=
-1 3 2|*
0 2 1|*
1 0 0|
2 0 0|
> 3 5 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 32.8395
P(chi-square) = 0.0001424

Total sequences searched: 790

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: