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Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Ralstonia eutropha H16  

Data for AM260479  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM260479.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM260479_0823 CDS_906526-904817 89.6 4.3e-25 1
AM260479_1771 CDS_1980878-1981930 88.3 9.7e-25 1
AM260479_2375 CDS_2655108-2653726 87.1 2.2e-24 1
AM260479_2530 CDS_2808960-2806111 78.3 6.8e-22 1
AM260479_0539 CDS_570403-568952 67.5 8e-19 1
AM260479_2277 CDS_2533924-2532746 65.6 2.8e-18 1
AM260479_3586 CDS_3969810-3971489 63.5 1e-17 1
AM260479_2113 CDS_2360363-2361781 61.5 4e-17 1
AM260479_1411 CDS_1546550-1547905 60.3 8.3e-17 1
AM260479_3161 CDS_3501278-3499173 55.7 1.8e-15 1
AM260479_3629 CDS_4025188-4023734 55.3 2.2e-15 1
AM260479_2967 CDS_3296666-3294948 54.2 4.5e-15 1
AM260479_2323 CDS_2584622-2586040 53.9 5.5e-15 1
AM260479_0293 CDS_311307-309871 53.1 9.4e-15 1
AM260479_0583 CDS_621315-622586 49.7 8.6e-14 1
AM260479_1445 CDS_1585478-1584129 43.8 3.9e-12 1
AM260479_3599 CDS_3986382-3983950 42.1 1.2e-11 1
AM260479_3041 CDS_3376547-3375402 40.9 2.7e-11 1
AM260479_1357 CDS_1488849-1486489 32.7 5.5e-09 1
AM260479_1721 CDS_1913451-1914752 32.7 5.6e-09 1
AM260479_3042 CDS_3377894-3376554 31.6 1.2e-08 1
AM260479_0688 CDS_743982-742033 31.5 1.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM260479_0823 1/1 191 258 .. 1 87 [] 89.6 4.3e-25
AM260479_1771 1/1 125 193 .. 1 87 [] 88.3 9.7e-25
AM260479_2375 1/1 206 272 .. 1 87 [] 87.1 2.2e-24
AM260479_2530 1/1 709 776 .. 1 87 [] 78.3 6.8e-22
AM260479_0539 1/1 250 315 .. 1 87 [] 67.5 8e-19
AM260479_2277 1/1 168 233 .. 1 87 [] 65.6 2.8e-18
AM260479_3586 1/1 293 358 .. 1 87 [] 63.5 1e-17
AM260479_2113 1/1 234 300 .. 1 87 [] 61.5 4e-17
AM260479_1411 1/1 230 295 .. 1 87 [] 60.3 8.3e-17
AM260479_3161 1/1 435 512 .. 1 87 [] 55.7 1.8e-15
AM260479_3629 1/1 250 322 .. 1 87 [] 55.3 2.2e-15
AM260479_2967 1/1 206 271 .. 1 87 [] 54.2 4.5e-15
AM260479_2323 1/1 244 309 .. 1 87 [] 53.9 5.5e-15
AM260479_0293 1/1 257 322 .. 1 87 [] 53.1 9.4e-15
AM260479_0583 1/1 218 276 .. 1 87 [] 49.7 8.6e-14
AM260479_1445 1/1 236 295 .. 1 87 [] 43.8 3.9e-12
AM260479_3599 1/1 568 640 .. 1 87 [] 42.1 1.2e-11
AM260479_3041 1/1 145 217 .. 1 87 [] 40.9 2.7e-11
AM260479_1357 1/1 552 622 .. 1 87 [] 32.7 5.5e-09
AM260479_1721 1/1 229 287 .. 1 87 [] 32.7 5.6e-09
AM260479_3042 1/1 224 292 .. 1 87 [] 31.6 1.2e-08
AM260479_0688 1/1 418 486 .. 1 87 [] 31.5 1.2e-08

Alignments of top-scoring domains:
AM260479_0823: domain 1 of 1, from 191 to 258: score 89.6, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELR+PL+aI+g+a+l+ e+ ++ ++ q
AM260479_0 191 AKSEFLSSMSHELRNPLNAILGFAQLMASEA-------PPPTASQ-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il+++ +ll+Lin++Ldl+rieag
AM260479_0 229 ----------QASIDQILKAGWHLLELINEVLDLARIEAG 258

AM260479_1771: domain 1 of 1, from 125 to 193: score 88.3, E = 9.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+lan+sH+LRTPL++++gy+e+Ll ++ +e+++e+r
AM260479_1 125 QRRELLANVSHDLRTPLASMQGYLEMLLLKA-------EEMTPEDR- 163

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+++ r erl +L++dl dl+++ea
AM260479_1 164 ----------NRYLQVATRHCERLGKLVQDLFDLTKLEAR 193

AM260479_2375: domain 1 of 1, from 206 to 272: score 87.1, E = 2.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt++ g++e+ ++ + se++r
AM260479_2 206 MRRDFVANVSHELKTPLTVLTGFLETVRD---------LPVSEDDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ +l ++ r++++++dlL l+++e+
AM260479_2 243 ----------RRYIDMMLAQSVRMQSIVEDLLALAKLESD 272

AM260479_2530: domain 1 of 1, from 709 to 776: score 78.3, E = 6.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt+++g+ae+L++ g t+l +e
AM260479_2 709 LRSSLLAAVSHDLRTPLTSLIGMAETLQR-------GTTPLAPEV-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++a+r+ +++ +lLd++r+++
AM260479_2 747 ----------AETVGAMRDQARRMHAMVANLLDMARLQSR 776

AM260479_0539: domain 1 of 1, from 250 to 315: score 67.5, E = 8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ e+s+e++
AM260479_0 250 TQKRFIADAAHQMKTPLAGLRMQAELAQR----------EQSPEEL- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i ++er +L+ +lL l+r+e+
AM260479_0 286 ----------RRSLAQIAGSSERTAHLVTQLLSLARMENL 315

AM260479_2277: domain 1 of 1, from 168 to 233: score 65.6, E = 2.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL+ el+e +
AM260479_2 168 ANKELIRNLAHEIKNPLGGIRGAAQLLEF----------ELPERSL- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
AM260479_2 204 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 233

AM260479_3586: domain 1 of 1, from 293 to 358: score 63.5, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++a+ ++e + s e +
AM260479_3 293 AQRKFIADAAHQLRTPLTAVKLHADRAQE----------ADSLEVA- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ ++ +a+r rL n+lL l+r+e g
AM260479_3 329 ----------RHALREVQTAADRAVRLSNQLLSLARAEPG 358

AM260479_2113: domain 1 of 1, from 234 to 300: score 61.5, E = 4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL ++g ++++l ++s eq+
AM260479_2 234 QLSAFNADVAHELRTPLGNVIGQTQVALS---------RPRSTEQL- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++ l+++erl+r++ d+L ++ + g
AM260479_2 271 ----------EEILQSNLEDLERLSRIVIDMLFVAQSDRG 300

AM260479_1411: domain 1 of 1, from 230 to 295: score 60.3, E = 8.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+++HE+RTPL+a+++ e++++ ++ ++e
AM260479_1 230 HERRLTADAAHEMRTPLAALKAQWEIAER---------SADDAER-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++r++rL+++lL+lsr+e
AM260479_1 266 ----------AQARANVATGIDRISRLVSQLLTLSRLEDA 295

AM260479_3161: domain 1 of 1, from 435 to 512: score 55.7, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
a+++++a+++H++R+PL+aI+ ++elL + + + ++a+d+ + ++
AM260479_3 435 AMGRLVASIAHQIRNPLAAISQASELLGDSGRRDpAAQDHGGADVDI 481

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i + ++rl++ ++d+L++sr
AM260479_3 482 D----------ARLLRIINDNVRRLDQVVSDVLQMSRRPRT 512

AM260479_3629: domain 1 of 1, from 250 to 322: score 55.3, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a+++H+LRTPL+ +++ ae ++++l + ++e+++
AM260479_3 250 SQAQFIADAAHQLRTPLAILKTQAEYAQRQL-------RAPDPETAR 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e++ i ++e+ rL n+lL l+r ++
AM260479_3 290 QAA-------GEAVGGIVTQLEQAARLTNQLLALARVRQH 322

AM260479_2967: domain 1 of 1, from 206 to 271: score 54.2, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++a+ +++e+L++ ++s+
AM260479_2 206 EKSRFLAAASHDLRQPVHALVMLVEALRA---------RNQSSAL-- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e + ++ ++ L + lLdls++e
AM260479_2 242 ----------HPLVEQVAAGTQTIDLLFRSLLDLSKLEGR 271

AM260479_2323: domain 1 of 1, from 244 to 309: score 53.9, E = 5.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++H+L+TPL+ I++ +el+l+ e+++e +
AM260479_2 244 ARKRFFADAAHQLKTPLAIIQAQSELALR----------ERDAERV- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++ +++ ++ +++lL lsr+e
AM260479_2 280 ----------REHMRLLHGTVRHASKGVQQLLSLSRLEPD 309

AM260479_0293: domain 1 of 1, from 257 to 322: score 53.1, E = 9.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HE++ PL+aI g+aelL+e e+++ +r
AM260479_0 257 YVEHYIHTLTHEMKSPLAAIGGAAELLQE----------EMPAADR- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+ ++ rl+ +i+ lL l+ e+
AM260479_0 293 ----------QRFVANIRAQSGRLETMIRKLLALADVEQR 322

AM260479_0583: domain 1 of 1, from 218 to 276: score 49.7, E = 8.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+++H+L+TPL+ +r+ ae+L +
AM260479_0 218 ERNTMLAGIAHDLKTPLARLRLRAEMLAD------------------ 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + r++e+++++++++L +++ +
AM260479_0 247 ----------PKAAAGVTRDVESMSAIVEQFLSFAQTSES 276

AM260479_1445: domain 1 of 1, from 236 to 295: score 43.8, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt +r+ +e+ ++++ ++
AM260479_1 236 DRVVMLAGISHDLRTPLTRLRLETEM------------SPMDTPT-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++e+++++i ++L ++r +
AM260479_1 269 -------------RDAMIADIEQMDAIIGQFLNYARPPLE 295

AM260479_3599: domain 1 of 1, from 568 to 640: score 42.1, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ + +++ +
AM260479_3 568 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL---SPKLEGTDADVL- 610

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ti +++ + r+++d++d++r
AM260479_3 611 ----------KRGAATIVNQVAAMKRMVDDFRDYARTPPA 640

AM260479_3041: domain 1 of 1, from 145 to 217: score 40.9, E = 2.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e la l+HEL+TPL+aI +a+ ++ ++ +e s++ +
AM260479_3 145 AIDETLAFLAHELNTPLAAIANFAHGIRGRVA------GEYSAQRQ- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++ + +++ a+++l+ ++ +L+ r ag
AM260479_3 185 -------AEIGQAASAMYDNAQYCLAVLSSFLQSVRNSAG 217

AM260479_1357: domain 1 of 1, from 552 to 622: score 32.7, E = 5.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ + ++l +++ ++e+++
AM260479_1 552 TMGEMASSLAHELNQPLAAINNYCMGAVARL-----HSGRSTPEDLI 593

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p le+ +a r +i++++ + + ++
AM260479_1 594 PV-----------LEKTSAQAVRAGTIISRIRGFVKRSQP 622

AM260479_1721: domain 1 of 1, from 229 to 287: score 32.7, E = 5.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +++ ae++++
AM260479_1 229 ERVQILAAISHDLQTPITRMKLRAEMAED------------------ 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++ +++ ++ L+ + L+++r+ +g
AM260479_1 258 ----------SEDKRKLVHDLAEIETLVKEGLTYARAMHG 287

AM260479_3042: domain 1 of 1, from 224 to 292: score 31.6, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+l HE ++P++ ++++e++ e + +++ + +
AM260479_3 224 AIGTLAAGLLHEVNNPVNFCLMAIEVAME-------EPQAKENPSL- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ +r++++++dl +++ g
AM260479_3 263 ----------EECLVDAKQGMQRIQHIVSDLKTFAYRKPG 292

AM260479_0688: domain 1 of 1, from 418 to 486: score 31.5, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+ + ++l + + ++
AM260479_0 418 AVGQMSTGIAHELNQPLAALRTISGNTGKFL-------ERGDYATV- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ti+ +er+ r+ l ++r +
AM260479_0 457 ----------RANLDTIIGLVERMGRITGALKSFARKSGN 486


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 8 0|=
-13 28 2|*==
-12 134 83|======*====
-11 285 432|====================== *
-10 612 802|================================================ *
-9 677 829|===================================================== *
-8 726 620|===============================================*========
-7 492 391|==============================*=======
-6 292 225|=================*=====
-5 176 123|=========*====
-4 91 66|=====*=
-3 40 34|==*=
-2 26 18|=*
-1 19 9|*=
0 9 4|*
1 7 2|*
2 2 1|*
3 2 0|=
4 0 0|
> 5 25 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 262.9599
P(chi-square) = 0

Total sequences searched: 3651

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: