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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Ralstonia eutropha H16  

Data for AM260480  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM260480.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM260480_2064 CDS_2353547-2350218 87.7 1.1e-24 1
AM260480_2061 CDS_2348463-2345143 87.5 1.2e-24 1
AM260480_0370 CDS_428827-427316 85.6 4.1e-24 1
AM260480_1947 CDS_2224603-2227998 77.5 7.8e-22 1
AM260480_1070 CDS_1229184-1227358 74.3 6.6e-21 1
AM260480_1604 CDS_1836873-1833880 72.1 2.7e-20 1
AM260480_2163 CDS_2475553-2476932 71.2 5e-20 1
AM260480_2326 CDS_2661439-2659433 71.0 5.7e-20 1
AM260480_0881 CDS_1014635-1011789 69.1 1.9e-19 1
AM260480_0078 CDS_86882-90217 67.8 4.4e-19 1
AM260480_2330 CDS_2666432-2668441 65.8 1.6e-18 1
AM260480_1522 CDS_1729940-1731934 63.8 6e-18 1
AM260480_1625 CDS_1860448-1858991 57.9 2.9e-16 1
AM260480_2538 CDS_2891800-2890472 57.8 3e-16 1
AM260480_1440 CDS_1634994-1632952 51.1 2.4e-14 1
AM260480_0561 CDS_641281-643086 50.6 3.4e-14 1
AM260480_0515 CDS_590385-592181 48.5 1.4e-13 1
AM260480_2069 CDS_2360452-2359004 48.2 1.6e-13 1
AM260480_1760 CDS_2025815-2024511 27.8 9.8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM260480_2064 1/1 508 573 .. 1 87 [] 87.7 1.1e-24
AM260480_2061 1/1 517 582 .. 1 87 [] 87.5 1.2e-24
AM260480_0370 1/1 125 192 .. 1 87 [] 85.6 4.1e-24
AM260480_1947 1/1 531 596 .. 1 87 [] 77.5 7.8e-22
AM260480_1070 1/1 179 245 .. 1 87 [] 74.3 6.6e-21
AM260480_1604 1/1 381 446 .. 1 87 [] 72.1 2.7e-20
AM260480_2163 1/1 238 304 .. 1 87 [] 71.2 5e-20
AM260480_2326 1/1 306 372 .. 1 87 [] 71.0 5.7e-20
AM260480_0881 1/1 709 776 .. 1 87 [] 69.1 1.9e-19
AM260480_0078 1/1 680 746 .. 1 87 [] 67.8 4.4e-19
AM260480_2330 1/1 285 351 .. 1 87 [] 65.8 1.6e-18
AM260480_1522 1/1 294 360 .. 1 87 [] 63.8 6e-18
AM260480_1625 1/1 246 312 .. 1 87 [] 57.9 2.9e-16
AM260480_2538 1/1 220 285 .. 1 87 [] 57.8 3e-16
AM260480_1440 1/1 449 516 .. 1 87 [] 51.1 2.4e-14
AM260480_0561 1/1 223 293 .. 1 87 [] 50.6 3.4e-14
AM260480_0515 1/1 233 298 .. 1 87 [] 48.5 1.4e-13
AM260480_2069 1/1 252 315 .. 1 87 [] 48.2 1.6e-13
AM260480_1760 1/1 229 287 .. 1 87 [] 27.8 9.8e-08

Alignments of top-scoring domains:
AM260480_2064: domain 1 of 1, from 508 to 573: score 87.7, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL +++g++elL t + q
AM260480_2 508 AKSQFLAAMSHEIRTPLYGMLGTLELLSL---------TQMAHSQ-- 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ti+++++ ll++++dlLd+sr+eag
AM260480_2 544 ----------REMLSTIQSSSQVLLQILDDLLDYSRAEAG 573

AM260480_2061: domain 1 of 1, from 517 to 582: score 87.5, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g +elL t l++ q
AM260480_2 517 AKSSFLATMSHEIRTPLNGMLGSIELLGL---------TRLDSRQ-- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ++++++++l +ind+Ld+s+ieag
AM260480_2 553 ----------RDQLAVMQHASQSLIYIINDVLDFSKIEAG 582

AM260480_0370: domain 1 of 1, from 125 to 192: score 85.6, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+++sHELR PL+aI+g+a+l+ ++ ++ ++ q
AM260480_0 125 AKSDFLSSMSHELRSPLNAILGFAQLMASDS-------PPPPPAQ-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il+++ +ll+Lin++Ldl++ieag
AM260480_0 163 ----------QASIDQILKAGWHLLELINEVLDLAKIEAG 192

AM260480_1947: domain 1 of 1, from 531 to 596: score 77.5, E = 7.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s f+a++sHE+RTPL+a++g++elL + + + +
AM260480_1 531 ARSTFFAAMSHEIRTPLNALLGNLELLAR---------GSGLAAH-- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++++ae l+r++nd+Ld+s+i+ag
AM260480_1 567 ----------APRLRALDSAAEALRRIVNDVLDFSKIDAG 596

AM260480_1070: domain 1 of 1, from 179 to 245: score 74.3, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++aI g++el l+ + +eq
AM260480_1 179 AKSTFLASVSHEIRTPMNAITGMLELTLA---------RCQLAEQE- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l t++++a ll+Li+d+Ldls++eag
AM260480_1 216 ----------RLQLVTAHKSAVGLLALIDDILDLSKMEAG 245

AM260480_1604: domain 1 of 1, from 381 to 446: score 72.1, E = 2.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f+a++sHE+RTPL++++g+ el + l +eq
AM260480_1 381 AKVAFFASMSHEIRTPLSSLLGNMELVAL---------GRLEPEQ-- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++ +ae ll+++nd+Ld+s+++ g
AM260480_1 417 ----------RARVSSMQVSAEGLLQIVNDVLDFSKLDVG 446

AM260480_2163: domain 1 of 1, from 238 to 304: score 71.2, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++l+HELRTP+t +++ +++ l +++++++
AM260480_2 238 RLSEFSSDLAHELRTPITNLMTQTQVVLS---------QPRDADK-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + +e++rl+r+++d+L l+++e+g
AM260480_2 274 ---------YRDVLASNVEELQRLSRMVSDMLYLAKMEHG 304

AM260480_2326: domain 1 of 1, from 306 to 372: score 71.0, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla l+HELR+PL+a+r ++e+++ t+ + +
AM260480_2 306 RLQSFLAILAHELRNPLAAVRNAVEVIEL---------TPDADTRV- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +i+r++++l+rL+ndlLd r ag
AM260480_2 343 ----------RRCAGIIDRQLHQLERLVNDLLDVGRVTAG 372

AM260480_0881: domain 1 of 1, from 709 to 776: score 69.1, E = 1.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLt+++g+ae++++ +d+ l +
AM260480_0 709 LRSSLLAAVSHDLRTPLTSLIGMAETMQR-------SDPGLAPSL-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +l++a+r++ ++ +lLd+++++
AM260480_0 747 ----------AETVAAMLEQARRMRTMVVNLLDMAKLQGR 776

AM260480_0078: domain 1 of 1, from 680 to 746: score 67.8, E = 4.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+ ++sHE+R L++I+gy++lLl+ ++l++
AM260480_0 680 AKSRFITGMSHEMRAGLNSILGYSQLLLR--------TPALPAAC-- 716

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ti r++e+l++L++ lL+lsrieag
AM260480_0 717 ----------REDVRTIGRAGEHLSSLVDGLLELSRIEAG 746

AM260480_2330: domain 1 of 1, from 285 to 351: score 65.8, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+l+HELR+PL+ +r +a+lL+ s e++
AM260480_2 285 RKDQFLAMLAHELRNPLAPLRSAADLLQQ---------LSPSREDM- 321

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i r++++l rL+++lLd+sr +g
AM260480_2 322 ----------FRARDIIGRQLHHLTRLVDELLDISRFNQG 351

AM260480_1522: domain 1 of 1, from 294 to 360: score 63.8, E = 6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efla+lsHELR+PL+ + ++ +++ ++ ++ +
AM260480_1 294 RMNEFLATLSHELRNPLAPVHSALAAMRL---------APEDAVLA- 330

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+r++ +l+rL++dlLd+ ri +g
AM260480_1 331 ----------NRSLAMIERQVTHLSRLVDDLLDIGRITSG 360

AM260480_1625: domain 1 of 1, from 246 to 312: score 57.9, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef a+l+H++RTP++ ++g +++ l+ + ++ +
AM260480_1 246 RLSEFSADLAHDFRTPISNLIGQTQVTLA---------QSRGVAE-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +le+ l+e erl r+i+++L l+r+++
AM260480_1 282 ---------YEALLESNLEEYERLARMIENMLFLARADHA 312

AM260480_2538: domain 1 of 1, from 220 to 285: score 57.8, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++H LRTPL+a+++ a+l ++ +++ r
AM260480_2 220 TQRAFVADAAHALRTPLAALQLQAQLVER----------AANGAAR- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ ++++ +erl +L+ +lL+l+r e g
AM260480_2 256 ----------DEAIGKLRQGLERLTHLVTQLLTLARQEPG 285

AM260480_1440: domain 1 of 1, from 449 to 516: score 51.1, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a+++HE+++P+++I+g++++++e + +++ e+
AM260480_1 449 VAGHLTAGVAHEINNPIAVIQGNLDVARE-------ILGPAAEPV-- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i+++++r+ L n+lL++ r ea
AM260480_1 487 ----------RHELRLIDEQVRRIHLLTNRLLQFVRPEAY 516

AM260480_0561: domain 1 of 1, from 223 to 293: score 50.6, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++ H+LR+P+ aI + a Ll+ l+++++ q+
AM260480_0 223 AKTRFLAAAGHDLRQPVYAIGLQAASLLT-----LGERGDVAGGQA- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ + r+++L++ lLd sr++ag
AM260480_0 264 ----------HAIGHRLQATLARMDNLLDGLLDASRLDAG 293

AM260480_0515: domain 1 of 1, from 233 to 298: score 48.5, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sH+LR+P++a+ +++e++ + ++++ ++
AM260480_0 233 AKNLFLTTASHDLRQPVHAMGFLIEAIAR---------RNRDPALIP 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p l+ ++r++++ + n lLdlsrie g
AM260480_0 271 P------------LDDLRRSVRSVHLMFNSLLDLSRIEGG 298

AM260480_2069: domain 1 of 1, from 252 to 315: score 48.2, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+n++HELR PL +r+ +el+++ ++++ + q
AM260480_2 252 WREQLLRNIAHELRSPLGRLRLSLELARR--------RDAMLDLQ-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i+re+erl++L+++ L+l+r+ a
AM260480_2 289 -------------FERIERETERLDALVERTLQLARLHAM 315

AM260480_1760: domain 1 of 1, from 229 to 287: score 27.8, E = 9.8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +++ ae+ ++ +e+
AM260480_1 229 ERVQILAAISHDLQTPITRMKLRAEMTED-------------SEE-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ++ L+ + L ++r+ +g
AM260480_1 261 -------------KRKLVQDLTEIETLVKEGLAYARAMHG 287


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 7 0|=
-13 23 1|*==
-12 77 58|======*==
-11 199 302|======================= *
-10 401 561|============================================= *
-9 491 580|======================================================= *
-8 498 434|================================================*=======
-7 352 273|==============================*=========
-6 193 157|=================*====
-5 119 86|=========*====
-4 69 46|=====*==
-3 50 24|==*===
-2 23 12|=*=
-1 12 6|*=
0 6 3|*
1 5 1|*
2 4 0|=
> 3 26 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 203.4364
P(chi-square) = 1.44e-37

Total sequences searched: 2555

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: