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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Yersinia enterocolitica subsp. enterocolitica 8081  

Data for AM286415  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM286415.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM286415_0701 CDS_866194-863360 87.6 1.7e-24 1
AM286415_3032 CDS_3456195-3454879 83.2 3.1e-23 1
AM286415_1337 CDS_1562600-1565467 80.1 2.4e-22 1
AM286415_3578 CDS_4076490-4074154 75.6 4.3e-21 1
AM286415_2883 CDS_3297087-3298562 72.3 3.7e-20 1
AM286415_0989 CDS_1156693-1158144 66.8 1.3e-18 1
AM286415_2521 CDS_2883050-2886874 64.8 4.9e-18 1
AM286415_0082 CDS_95432-94056 63.6 1.1e-17 1
AM286415_0026 CDS_36458-35409 62.2 2.8e-17 1
AM286415_2821 CDS_3223856-3226555 61.1 5.7e-17 1
AM286415_1056 CDS_1234736-1233360 60.7 7.4e-17 1
AM286415_3228 CDS_3696283-3694856 59.3 1.8e-16 1
AM286415_1150 CDS_1341431-1342798 55.6 2.1e-15 1
AM286415_3844 CDS_4356467-4357819 52.7 1.4e-14 1
AM286415_0403 CDS_491725-490664 45.7 1.3e-12 1
AM286415_4020 CDS_4586022-4587371 35.1 1.4e-09 1
AM286415_1339 CDS_1568998-1566305 33.3 4.1e-09 1
AM286415_1982 CDS_2280770-2282047 31.7 1.2e-08 1
AM286415_3404 CDS_3874599-3876968 27.2 2.3e-07 1
AM286415_3424 CDS_3894393-3896750 27.2 2.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM286415_0701 1/1 291 356 .. 1 87 [] 87.6 1.7e-24
AM286415_3032 1/1 203 269 .. 1 87 [] 83.2 3.1e-23
AM286415_1337 1/1 471 536 .. 1 87 [] 80.1 2.4e-22
AM286415_3578 1/1 282 347 .. 1 87 [] 75.6 4.3e-21
AM286415_2883 1/1 238 304 .. 1 87 [] 72.3 3.7e-20
AM286415_0989 1/1 257 325 .. 1 87 [] 66.8 1.3e-18
AM286415_2521 1/1 738 802 .. 1 87 [] 64.8 4.9e-18
AM286415_0082 1/1 238 300 .. 1 87 [] 63.6 1.1e-17
AM286415_0026 1/1 129 194 .. 1 87 [] 62.2 2.8e-17
AM286415_2821 1/1 665 732 .. 1 87 [] 61.1 5.7e-17
AM286415_1056 1/1 234 298 .. 1 87 [] 60.7 7.4e-17
AM286415_3228 1/1 255 320 .. 1 87 [] 59.3 1.8e-16
AM286415_1150 1/1 232 295 .. 1 87 [] 55.6 2.1e-15
AM286415_3844 1/1 233 293 .. 1 87 [] 52.7 1.4e-14
AM286415_0403 1/1 136 196 .. 1 87 [] 45.7 1.3e-12
AM286415_4020 1/1 221 288 .. 1 87 [] 35.1 1.4e-09
AM286415_1339 1/1 450 515 .. 1 87 [] 33.3 4.1e-09
AM286415_1982 1/1 201 261 .. 1 87 [] 31.7 1.2e-08
AM286415_3404 1/1 308 352 .. 1 65 [. 27.2 2.3e-07
AM286415_3424 1/1 308 352 .. 1 65 [. 27.2 2.3e-07

Alignments of top-scoring domains:
AM286415_0701: domain 1 of 1, from 291 to 356: score 87.6, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
AM286415_0 291 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTPTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++ea+
AM286415_0 327 ----------TDYLQTIQRSANNLLCIINDVLDFSKLEAE 356

AM286415_3032: domain 1 of 1, from 203 to 269: score 83.2, E = 3.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el + r
AM286415_3 203 ARRNFFANVSHELRTPLTVLQGYLEMMHD---------QELVGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
AM286415_3 240 ----------DKALGTMQEQTKRMDGLVKQLLTLSRIEAA 269

AM286415_1337: domain 1 of 1, from 471 to 536: score 80.1, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
AM286415_1 471 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPQGV-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + +++ ll++i+d+Ld+s+ie++
AM286415_1 507 ----------ERLVTAMNNSSGLLLKIISDILDFSKIESE 536

AM286415_3578: domain 1 of 1, from 282 to 347: score 75.6, E = 4.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
AM286415_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELDSEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
AM286415_3 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

AM286415_2883: domain 1 of 1, from 238 to 304: score 72.3, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPLt ++g ++l l +s+e++
AM286415_2 238 QLESFNADVAHELRTPLTNLLGQTQLGLS---------RRRSPEEL- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l + l+e+er+ +++nd+L ls + ag
AM286415_2 275 ----------EELLGSNLEELERMTSIVNDMLFLSHAHAG 304

AM286415_0989: domain 1 of 1, from 257 to 325: score 66.8, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
AM286415_0 257 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTQDQ-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l+ Li++lLd+ r a
AM286415_0 296 ----------KEVVAILDNSSRHLQLLIEQLLDYNRKLAD 325

AM286415_2521: domain 1 of 1, from 738 to 802: score 64.8, E = 4.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTP+ aI+g++el + +e++ ++
AM286415_2 738 TKSTFLATISHELRTPMYAIMGLLELEIR---------SEQPVDK-- 773

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l t+ ++a++l L++d+ d ++ieag
AM286415_2 774 -----------NTLVTVSKSAQSLMLLLDDIIDSAKIEAG 802

AM286415_0082: domain 1 of 1, from 238 to 300: score 63.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + ++
AM286415_0 238 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
AM286415_0 274 -------------LERIEMEAQRLDSMINDLLVLSRSQHK 300

AM286415_0026: domain 1 of 1, from 129 to 194: score 62.2, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
AM286415_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
AM286415_0 165 ----------LEYTKVIIEQADRLRNLVDRLLGPQRPGQH 194

AM286415_2821: domain 1 of 1, from 665 to 732: score 61.1, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
AM286415_2 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSRH-- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + rL+n+lLd++ri++g
AM286415_2 703 ----------APQANQIRQQVLSTTRLVNNLLDMARIQSG 732

AM286415_1056: domain 1 of 1, from 234 to 298: score 60.7, E = 7.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e+L++++ + ++e
AM286415_1 234 MRRDFMADVSHELRTPLAVLRGELEALQDGV-------RAPTPES-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++ e+ l +L+ndl +ls + g
AM286415_1 272 -------------LISLQAEVGILTKLVNDLHQLSLSDRG 298

AM286415_3228: domain 1 of 1, from 255 to 320: score 59.3, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aI g+aelL+e ++ ++
AM286415_3 255 YIEQYVHTLTHELKSPLAAITGAAELLRE---------SPPPATA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++++ r+++L++ +L +r+e+
AM286415_3 291 ----------QRFLMNIEQQSTRIQQLVDKMLIQARLESR 320

AM286415_1150: domain 1 of 1, from 232 to 295: score 55.6, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ +++ +
AM286415_1 232 AREQLLHDVSHELRSPLARLQLAIGLARQ------------NPDNV- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++e+erl+++i +lL lsr+e+
AM286415_1 266 ----------ENSLQRIEHESERLDKMIGELLALSRAENH 295

AM286415_3844: domain 1 of 1, from 233 to 293: score 52.7, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
AM286415_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------AD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
AM286415_3 264 ----------GYLSESINKDIEECNAIIEQFIDYLRTGQE 293

AM286415_0403: domain 1 of 1, from 136 to 196: score 45.7, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el++ + +e +
AM286415_0 136 QERLFTADAAHELRTPLAGIRLHLELMEQ---------QGITESK-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ l i++lL lsr++++
AM286415_0 172 ---------------SLISRIDLLMLTIEQLLMLSRAGQN 196

AM286415_4020: domain 1 of 1, from 221 to 288: score 35.1, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e + +++HEL++PLta ++y +++l+ + +eq+
AM286415_4 221 AMGEIATGIAHELNQPLTATLTYNQTALR--------LLPPQDEQV- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ++++r+ +L+++l++l ++
AM286415_4 259 ----------APLLVASVEQIKRIAALLDRLRTLLSRGQI 288

AM286415_1339: domain 1 of 1, from 450 to 515: score 33.3, E = 4.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +l nl EL++P++ + +a+ L++ t+ ++ q
AM286415_1 450 ARKLMLHNLGIELNQPINNLNQTAKELQN---------TTDPAVQ-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +++e++ +Li+++ l+r+e++
AM286415_1 486 ----------HELARKLAEQSESIIELIDNITLLTRLETQ 515

AM286415_1982: domain 1 of 1, from 201 to 261: score 31.7, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ++ +++HELRTPL +r + + + l+e ++
AM286415_1 201 SKKLLIDGIAHELRTPLVRLRYRLAMSDN-----------LTESEQ- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ +l++Li++lL+++r++ +
AM286415_1 236 --------------LALNHDIGQLEALIDELLTYARLDRP 261

AM286415_3404: domain 1 of 1, from 308 to 352: score 27.2, E = 2.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l+ ++HELRTPL +I++++e L + s+ qr
AM286415_3 308 KNNLELSVIAHELRTPLIGILTACEGLVD---------KIVSASQR- 344

peLRledpeyreyletil<-*
+++ ++i+
AM286415_3 345 ----------ERLANVIH 352

AM286415_3424: domain 1 of 1, from 308 to 352: score 27.2, E = 2.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l+ ++HELRTPL +I++++e L + s+ qr
AM286415_3 308 KNNLELSVIAHELRTPLIGILTACEGLVD---------KIVSASQR- 344

peLRledpeyreyletil<-*
+++ ++i+
AM286415_3 345 ----------ERLANVIH 352


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 8 0|=
-13 30 2|*==
-12 174 90|======*=======
-11 407 471|================================ *
-10 656 875|=================================================== *
-9 722 903|======================================================== *
-8 688 676|===================================================*=
-7 490 426|================================*=====
-6 348 245|==================*========
-5 190 134|==========*====
-4 124 72|=====*====
-3 46 38|==*=
-2 31 19|=*=
-1 22 10|*=
0 8 5|*
1 7 2|*
2 1 1|*
3 3 0|=
> 4 24 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 310.7081
P(chi-square) = 0

Total sequences searched: 4048

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: