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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Alcanivorax borkumensis SK2  

Data for AM286690  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM286690.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM286690_1627 CDS_1861125-1863917 104.6 1.8e-29 1
AM286690_0442 CDS_485034-482593 102.2 8.9e-29 1
AM286690_1598 CDS_1826804-1829632 102.1 9.1e-29 1
AM286690_1853 CDS_2128085-2126145 99.9 4e-28 1
AM286690_0972 CDS_1095621-1098224 96.6 3.3e-27 1
AM286690_0167 CDS_174960-176270 82.5 3.3e-23 1
AM286690_1307 CDS_1482446-1486114 75.7 2.8e-21 1
AM286690_1986 CDS_2270797-2274231 74.8 4.9e-21 1
AM286690_0472 CDS_514460-512826 68.9 2.4e-19 1
AM286690_1243 CDS_1417726-1419870 68.7 2.7e-19 1
AM286690_0713 CDS_799937-801562 66.5 1.1e-18 1
AM286690_2018 CDS_2305082-2307895 65.3 2.4e-18 1
AM286690_0626 CDS_691809-690454 56.8 6.2e-16 1
AM286690_2260 CDS_2580528-2579425 53.7 4.9e-15 1
AM286690_2517 CDS_2854348-2856168 51.6 1.9e-14 1
AM286690_0269 CDS_292830-294149 50.4 4.1e-14 1
AM286690_0342 CDS_379720-376772 50.2 4.7e-14 1
AM286690_1690 CDS_1926751-1925396 47.3 3.2e-13 1
AM286690_2000 CDS_2288924-2287581 46.1 6.7e-13 1
AM286690_0829 CDS_921301-922560 43.6 3.4e-12 1
AM286690_0030 CDS_33318-32005 36.8 2.9e-10 1
AM286690_2155 CDS_2464960-2461493 31.9 7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM286690_1627 1/1 290 355 .. 1 87 [] 104.6 1.8e-29
AM286690_0442 1/1 425 490 .. 1 87 [] 102.2 8.9e-29
AM286690_1598 1/1 440 505 .. 1 87 [] 102.1 9.1e-29
AM286690_1853 1/1 263 328 .. 1 87 [] 99.9 4e-28
AM286690_0972 1/1 369 434 .. 1 87 [] 96.6 3.3e-27
AM286690_0167 1/1 202 269 .. 1 87 [] 82.5 3.3e-23
AM286690_1307 1/1 552 620 .. 1 87 [] 75.7 2.8e-21
AM286690_1986 1/1 696 762 .. 1 87 [] 74.8 4.9e-21
AM286690_0472 1/1 329 394 .. 1 87 [] 68.9 2.4e-19
AM286690_1243 1/1 189 254 .. 1 87 [] 68.7 2.7e-19
AM286690_0713 1/1 309 374 .. 1 87 [] 66.5 1.1e-18
AM286690_2018 1/1 416 481 .. 1 87 [] 65.3 2.4e-18
AM286690_0626 1/1 228 292 .. 1 87 [] 56.8 6.2e-16
AM286690_2260 1/1 137 194 .. 1 79 [. 53.7 4.9e-15
AM286690_2517 1/1 245 308 .. 1 87 [] 51.6 1.9e-14
AM286690_0269 1/1 224 282 .. 1 87 [] 50.4 4.1e-14
AM286690_0342 1/1 758 823 .. 1 87 [] 50.2 4.7e-14
AM286690_1690 1/1 233 292 .. 1 87 [] 47.3 3.2e-13
AM286690_2000 1/1 222 287 .. 1 87 [] 46.1 6.7e-13
AM286690_0829 1/1 215 277 .. 1 87 [] 43.6 3.4e-12
AM286690_0030 1/1 223 289 .. 1 87 [] 36.8 2.9e-10
AM286690_2155 1/1 792 863 .. 1 87 [] 31.9 7e-09

Alignments of top-scoring domains:
AM286690_1627: domain 1 of 1, from 290 to 355: score 104.6, E = 1.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL + ++ls+ q
AM286690_1 290 IKSEFLANMSHEIRTPLNGIIGFTKLLHR---------SPLSARQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+ti+++ae+ll++ind+Ld+s+ieag
AM286690_1 326 ----------EEYLSTIHKSAESLLAIINDVLDFSKIEAG 355

AM286690_0442: domain 1 of 1, from 425 to 490: score 102.2, E = 8.9e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+sefla +sHE+RTPL++I+g++++L+ ++l++eq
AM286690_0 425 ARSEFLAVMSHEIRTPLNGIIGTVDMLKG---------SPLNDEQ-- 460

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i++++++ll+Lind+Ld+srieag
AM286690_0 461 ----------RHNLNVIEQSGNSLLNLINDILDYSRIEAG 490

AM286690_1598: domain 1 of 1, from 440 to 505: score 102.1, E = 9.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++I+g+++lL++ t+++ +q
AM286690_1 440 AKSEFLATMSHEIRTPMNGIMGMTDLLRR---------TDMTQQQ-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ ti++++++llr ind+Ld+s+ie+g
AM286690_1 476 ----------EQYVGTIYQSTQSLLRVINDILDYSKIESG 505

AM286690_1853: domain 1 of 1, from 263 to 328: score 99.9, E = 4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTP+++++g+++lL+e t++++eq
AM286690_1 263 AKSDFLAMMSHELRTPMNGVLGMLQLLEE---------TAQNDEQ-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ +l+++ +ll+ ind+Ld+srieag
AM286690_1 299 ----------HEYTQAALESTGHLLDVINDILDFSRIEAG 328

AM286690_0972: domain 1 of 1, from 369 to 434: score 96.6, E = 3.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla +sHE+RTPL++++g+aelL+e t+ s+ q
AM286690_0 369 AKSLFLARMSHEIRTPLNGVIGLAELLRE---------TDPSPRQ-- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ i+++++ l +Lind+Ld+++ieag
AM286690_0 405 ----------QEYISLIDSAGRTLTALINDVLDFAKIEAG 434

AM286690_0167: domain 1 of 1, from 202 to 269: score 82.5, E = 3.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHEL+TPLt+++gy+e+Ll+ +l+eeq
AM286690_0 202 MRKDFVANVSHELKTPLTVLKGYLETLLD----------TLPEEQ-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+Rl r++l ++++++r+++L+ dlL l+r+e
AM286690_0 237 --ARL-----RRALMQMDNQSNRMEALVADLLLLARLEGT 269

AM286690_1307: domain 1 of 1, from 552 to 620: score 75.7, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl+++sHELRTPL++I+ ++ +L + ++l e+q
AM286690_1 552 YKSEFLSTMSHELRTPLNSILILSNALAQ------NKKGNLEEKQ-- 590

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++i++++ ll+Lind+Ld+s+ie+g
AM286690_1 591 ----------VEHAQVIHSAGTDLLSLINDILDISKIEEG 620

AM286690_1986: domain 1 of 1, from 696 to 762: score 74.8, E = 4.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ l +lsHELR PL+a gya+lL+ d++ +e
AM286690_1 696 AKSRYLTGLSHELRSPLNAAFGYAQLLEQ--------DPTIPENR-- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++ i+r++e+l++Li+ lL++s+ieag
AM286690_1 733 ----------RDAIGAIRRSTEHLSDLIEGLLEISKIEAG 762

AM286690_0472: domain 1 of 1, from 329 to 394: score 68.9, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ a+l+HE+R+PL+aI +++lLl+ ++ s e+
AM286690_0 329 SLGRLSATLAHEIRNPLSAINHASDLLLD---------GDPSQED-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i++ + r + +i d+Ldlsr g
AM286690_0 365 ----------QHLLQIIRNHVTRVNGIIHDVLDLSRRPKG 394

AM286690_1243: domain 1 of 1, from 189 to 254: score 68.7, E = 2.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l+HELRTP+++++g+ +lL++ t l++eq
AM286690_1 189 VQLSLVYRLAHELRTPMNSLMGMMSLLED---------TRLNDEQ-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ ++++ ll Li+d+Ld+sri +
AM286690_1 225 ----------KDYLQVAGQSGKLLLTLIDDVLDYSRILSR 254

AM286690_0713: domain 1 of 1, from 309 to 374: score 66.5, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ +r+ +e+L + s+e r
AM286690_0 309 SQREMTRAVSHELRTPVARLRFGLEMLAD----------IESAERR- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ +++++e+l++Li+++L+++r+e+g
AM286690_0 345 ----------REKLNAMDQDIEQLDQLIDEILTYARLEQG 374

AM286690_2018: domain 1 of 1, from 416 to 481: score 65.3, E = 2.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e l+ + H+ RTPL++I+g++e+L + t+l++ q
AM286690_2 416 TRRETLSRIGHDVRTPLSGILGMSEILAD---------TPLTPNQ-- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ i+++++ llr+ind+L+ s++ +
AM286690_2 452 ----------RECVSAIQNAGDNLLRIINDVLEHSQLSTS 481

AM286690_0626: domain 1 of 1, from 228 to 292: score 56.8, E = 6.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++++++HELRTP++ ++g +e+L + + ++ q
AM286690_0 228 ARQRWFSDIAHELRTPVAILQGELEALCD---------GIRPLNQ-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +++e+ +l +Lindl dl+ ++ g
AM286690_0 264 -----------ESLKGLESEVAQLTHLINDLHDLALADGG 292

AM286690_2260: domain 1 of 1, from 137 to 194: score 53.7, E = 4.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++++HE+++PL +Irg+a+lL++ +l+++++
AM286690_2 137 ATRALVRGVAHEIKNPLGGIRGAAQLLER----------ALPSPDL- 172

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i++ea+rl++ +++L
AM286690_2 173 ----------TEYTRVIIDEADRLRSVADRML 194

AM286690_2517: domain 1 of 1, from 245 to 308: score 51.6, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+LR+PL a +ya +L++++ ++q
AM286690_2 245 SKTRFLAAASHDLRQPLQAATLYAAMLKNNA-----------DPQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++ ++ ++++L+ lL lsr+++
AM286690_2 279 ----------PDIVDKLDTAIGSCNELLGHLLMLSRLQSR 308

AM286690_0269: domain 1 of 1, from 224 to 282: score 50.4, E = 4.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt +r+ ae +++
AM286690_0 224 DRALLLAGVSHDLRTPLTRLRLSAEFMQD------------------ 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i++++e ++++++++ + r +a
AM286690_0 253 ----------EELAKGIIEDIEDMDAILDQFISFIRDGAD 282

AM286690_0342: domain 1 of 1, from 758 to 823: score 50.2, E = 4.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+taI +a+ L ++ eeq
AM286690_0 758 SIGRLAAGIAHEIGNPVTAIACLAQNLDS---------ETDAEEQ-- 793

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + il++++r+ r+++ l ++s +
AM286690_0 794 ----------LESSQQILEQTRRITRIVESLVTFSHSGGI 823

AM286690_1690: domain 1 of 1, from 233 to 292: score 47.3, E = 3.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++l ++sHELRTPL+ ++ ++e + +e
AM286690_1 233 TQKQLLNDMSHELRTPLSRLSVALENAINE----------------- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++e+++++ L++d L l + ++
AM286690_1 263 ----------QQLRQRLEQELRHMRTLVDDTLALGWQDTD 292

AM286690_2000: domain 1 of 1, from 222 to 287: score 46.1, E = 6.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRT L ++r++a+ ++ l+++q++
AM286690_2 222 REKRFTADAAHELRTLLMVLRLHADNARS-----------LPDPQQR 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ +++++ r +r++++lL l+r++
AM286690_2 258 ----------EESLQGLQEAVGRAERMLEQLLVLARLDPA 287

AM286690_0829: domain 1 of 1, from 215 to 277: score 43.6, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++++sHELRTPL++ r+++elL + +
AM286690_0 215 RERQFTRDASHELRTPLAVFRANLELLVI---------QIGD----- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++++ ++ +++ ++ lL l+r e+
AM286690_0 248 ----------RPLIRRMDDTVDDMEATLETLLMLARTEQH 277

AM286690_0030: domain 1 of 1, from 223 to 289: score 36.8, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +l+HELRTPL+a+++ +++++ +++ +
AM286690_0 223 RERRLTDDLAHELRTPLAALKTQLQVARL---------KMAPDAPA- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l +++++ r+ + +++lL l+r++
AM286690_0 260 ----------MMALTAAENASSRMADNLQQLLALARLDGL 289

AM286690_2155: domain 1 of 1, from 792 to 863: score 31.9, E = 7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla++ H+L +PL+a +++a+ L+ ++++++ + ++
AM286690_2 792 GKTLFLAAAGHDLMQPLNAAQLFASSLRQ-----QLRSQADGQFDHE 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+++++ +++i+ lL++s++++g
AM286690_2 834 ----------VQVLGHIDSSLQAAEQIISALLEISKLDTG 863


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 2 0|=
-13 30 2|*===
-12 101 62|======*=====
-11 248 326|============================ *
-10 469 605|===================================================== *
-9 488 625|======================================================= *
-8 494 468|===================================================*===
-7 346 295|================================*======
-6 241 169|==================*========
-5 132 93|==========*====
-4 72 49|=====*==
-3 38 26|==*==
-2 26 13|=*=
-1 18 7|*=
0 6 3|*
1 6 1|*
2 4 1|*
3 1 0|=
4 1 0|=
5 2 0|=
6 1 0|=
7 0 0|
8 1 0|=
9 0 0|
10 2 0|=
11 0 0|
12 0 0|
13 1 0|=
14 0 0|
15 0 0|
16 1 0|=
> 17 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 200.8859
P(chi-square) = 4.871e-37

Total sequences searched: 2755

Whole sequence top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 22
Satisfying E cutoff: 22
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: