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Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Flavobacterium psychrophilum JIP02/86  

Data for AM398681  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM398681.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM398681_1635 CDS_1908292-1906562 82.2 3.5e-23 1
AM398681_1425 CDS_1660063-1662252 64.5 3.7e-18 1
AM398681_0353 CDS_440268-441332 57.4 3.9e-16 1
AM398681_1362 CDS_1599785-1600981 54.5 2.5e-15 1
AM398681_1774 CDS_2073711-2072128 54.1 3.3e-15 1
AM398681_0965 CDS_1144607-1145965 48.7 1.1e-13 1
AM398681_0992 CDS_1173408-1176020 37.8 1.4e-10 1
AM398681_0048 CDS_69198-70673 34.1 1.5e-09 1
AM398681_2285 CDS_2695774-2694629 29.8 2.5e-08 1
AM398681_0994 CDS_1177159-1178184 27.1 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM398681_1635 1/1 352 420 .. 1 87 [] 82.2 3.5e-23
AM398681_1425 1/1 358 423 .. 1 87 [] 64.5 3.7e-18
AM398681_0353 1/1 124 191 .. 1 87 [] 57.4 3.9e-16
AM398681_1362 1/1 175 243 .. 1 87 [] 54.5 2.5e-15
AM398681_1774 1/1 301 369 .. 1 87 [] 54.1 3.3e-15
AM398681_0965 1/1 233 301 .. 1 87 [] 48.7 1.1e-13
AM398681_0992 1/1 655 723 .. 1 87 [] 37.8 1.4e-10
AM398681_0048 1/1 274 345 .. 1 87 [] 34.1 1.5e-09
AM398681_2285 1/1 174 233 .. 1 87 [] 29.8 2.5e-08
AM398681_0994 1/1 126 194 .. 1 87 [] 27.1 1.4e-07

Alignments of top-scoring domains:
AM398681_1635: domain 1 of 1, from 352 to 420: score 82.2, E = 3.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+a++sHEL+TP+++I++ ++lL++e+ + l+eeq
AM398681_1 352 AKTNFIATISHELKTPISSIKFSLQLLEKEQT------GILNEEQ-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i+++++rll++ +lL+ls+ e+g
AM398681_1 391 ----------KYLVESIQDDSQRLLKITGELLELSQVETG 420

AM398681_1425: domain 1 of 1, from 358 to 423: score 64.5, E = 3.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ efl+++sHELRTPL+aI g +++Ll+ ++ + q+
AM398681_1 358 ARAEFLSTVSHELRTPLNAINGISHILLD---------DNPKPRQI- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl++++ ++++ll in++L++ rie+
AM398681_1 395 -----------EYLKSLKFSGNHLLTYINEILEINRIESD 423

AM398681_0353: domain 1 of 1, from 124 to 191: score 57.4, E = 3.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efl n+sHEL+TPL +++gy+++Ll+ +++ ++ ++
AM398681_0 124 FRREFLGNVSHELKTPLFTVQGYISTLLD---------GAMKDKIIR 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++++ +erl +++dl +++++e
AM398681_0 162 ----------KKYLERAEKGVERLIYIVEDLDTIAKLEIA 191

AM398681_1362: domain 1 of 1, from 175 to 243: score 54.5, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+ HE++TPL++I+ ++ L+ +++ +++e++
AM398681_1 175 LQRDFINNMTHEFKTPLSSILIASNYLKQ-------QESIKTDEKL- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i+++++ l++ i+ +L +++ ++
AM398681_1 214 ----------EKYAQIIINQSNKLNNHIEKILNIAKWDNI 243

AM398681_1774: domain 1 of 1, from 301 to 369: score 54.1, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HE++TP+++I ++++++++ +++++
AM398681_1 301 IKTDFINNMTHEFKTPIATINLALDAIKN--------PKVIDDKEK- 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +yl+ i++e +r+ ++++++L++s++e
AM398681_1 339 ---------VFRYLQMIKDENKRMHAQVENVLQISKLEKR 369

AM398681_0965: domain 1 of 1, from 233 to 301: score 48.7, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HEL+TPL+++ +++L++ + ++ +q+
AM398681_0 233 IKTDFINNITHELKTPLATLAISTKILER--------KEIRDNQQH- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ti r+ +rl++Li+++L s +++
AM398681_0 271 ---------FDNLVATISRQNNRLQQLIDQVLNNSLEDSE 301

AM398681_0992: domain 1 of 1, from 655 to 723: score 37.8, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++ +sH+L+ PL +I +++ ++e+ d l++++
AM398681_0 655 ELEDYASIVSHDLKSPLRSIHSLISWIKEDND------NQLNDQT-- 693

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i+ +e ++ Li+ +L++++i+
AM398681_0 694 ----------LQYLSLIEGKVEKMDYLIEGILTYAKIDKI 723

AM398681_0048: domain 1 of 1, from 274 to 345: score 34.1, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ ++HE+++PLt +r++++ ++++d t+ + q+l
AM398681_0 274 AWREMAKQVAHEIKNPLTPMRLTVQSYQRKFD-----PTDPNVTQKL 315

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y +t++++++ +++ + + ++ + a+
AM398681_0 316 ----------NDYSKTLIQQIDTMSAVASAFSNFASMPAQ 345

AM398681_2285: domain 1 of 1, from 174 to 233: score 29.8, E = 2.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +H++ TPL++++g +e+++ ++ +e
AM398681_2 174 LWAGMAKETAHQIGTPLSSLIGWVEIMKS---------DNVDETM-- 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e i+++++rll++ +++ s+i+++
AM398681_2 210 -------------VEEIEKDIHRLLNITDRF---SKIGSE 233

AM398681_0994: domain 1 of 1, from 126 to 194: score 27.1, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e + +sH+L+ PL +I +++ +e+ + l++
AM398681_0 126 ALNEYAHVVSHDLKAPLRSIDTLINWFKEDNA------AILDDNN-- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ +l+ +e ++ Li +Ld+s i+
AM398681_0 165 ----------NKSLDLVLSNVEKMDLLIKGILDYSAIDKL 194


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 8 0|=
-13 43 1|*====
-12 149 55|======*==========
-11 295 285|===============================*=
-10 468 530|==================================================== *
-9 505 547|========================================================= *
-8 362 410|========================================= *
-7 250 258|============================*
-6 159 148|================*=
-5 83 81|========*=
-4 29 43|====*
-3 16 23|==*
-2 23 12|=*=
-1 6 6|*
0 1 3|*
1 4 1|*
2 0 0|
> 3 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 194.3893
P(chi-square) = 1.083e-35

Total sequences searched: 2432

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: