Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Flavobacterium psychrophilum JIP02/86  

Data for AM398681  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM398681.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM398681_0694 CDS_843941-842160 31.4 3.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM398681_0694 1/1 397 461 .. 1 70 [] 31.4 3.5e-09

Alignments of top-scoring domains:
AM398681_0694: domain 1 of 1, from 397 to 461: score 31.4, E = 3.5e-09
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+ LHD v+ Ls++ l+l++ + l +k+ +++ l+
AM398681_0 397 ERNKISAILHDHVSAVLSSVGLHLSAFESSL--TKE--QIA-DLKKT 438

relarealaevRrllgdLRpaal<-*
r l++ a + vR+l ++L p+ l
AM398681_0 439 RSLLKNAHDKVRDLSHELVPPLL 461


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 50 0|=====
-13 141 0|===============
-12 219 26|==*===================
-11 275 221|======================*=====
-10 559 512|===================================================*====
-9 497 582|================================================== *
-8 271 448|============================ *
-7 173 282|================== *
-6 96 159|========== *
-5 67 85|======= *
-4 30 44|=== *
-3 15 23|==*
-2 8 11|=*
-1 4 5|*
0 5 3|*
> 1 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1550.0680
P(chi-square) = 0

Total sequences searched: 2432

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: