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Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Azoarcus sp. BH72  

Data for AM406670  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM406670.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM406670_2969 CDS_3261633-3260287 58.1 7.8e-17 1
AM406670_2977 CDS_3271523-3272992 55.3 5e-16 1
AM406670_1503 CDS_1646212-1644737 52.7 3.1e-15 1
AM406670_0567 CDS_598310-599704 50.2 1.6e-14 1
AM406670_2746 CDS_3029233-3031296 44.4 8.3e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM406670_2969 1/1 242 310 .. 1 70 [] 58.1 7.8e-17
AM406670_2977 1/1 258 325 .. 1 70 [] 55.3 5e-16
AM406670_1503 1/1 286 352 .. 1 70 [] 52.7 3.1e-15
AM406670_0567 1/1 259 323 .. 1 70 [] 50.2 1.6e-14
AM406670_2746 1/1 482 544 .. 5 70 .] 44.4 8.3e-13

Alignments of top-scoring domains:
AM406670_2969: domain 1 of 1, from 242 to 310: score 58.1, E = 7.8e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ +ARELHD+ gQsL+ai + ++r++ +++p++++e ++ i
AM406670_2 242 ERRELARELHDEFGQSLTAIGAAAAFVERHAA-AAEPAQLAECARDI 287

relarealaevRrllgdLRpaal<-*
r+ + + a+vR ll++LRp +l
AM406670_2 288 RGESGRMSAQVRGLLRQLRPHGL 310

AM406670_2977: domain 1 of 1, from 258 to 325: score 55.3, E = 5e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ IARELHD+++Q+++a++ ++++ ++ ++ p + +++i
AM406670_2 258 ERRIIARELHDELAQGITAVRAIAGAIGQRS--ADQP-GIHGSAQTI 301

relarealaevRrllgdLR.paal<-*
++ + ++ vR++l++LR+p++
AM406670_2 302 VAMTGQMQDGVRAILQRLRpPTVA 325

AM406670_1503: domain 1 of 1, from 286 to 352: score 52.7, E = 3.1e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+++ARELHD gQ+L++++ + +r+ + ++++++ ld i
AM406670_1 286 ERRHLARELHDDMGQHLTSLRAETAFLRHGA---GENAALQPSLDSI 329

relarealaevRrllgdLRpaal<-*
++ + + + v +++++LRp++l
AM406670_1 330 EASLAQLHESVQDIVHRLRPPGL 352

AM406670_0567: domain 1 of 1, from 259 to 323: score 50.2, E = 1.6e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD++g L+a+++ + ++ + +++ +++ +++
AM406670_0 259 ERERIARELHDELGALLTAARMDAAALG-----GDMAPAHQARHARL 300

relarealaevRrllgdLRpaal<-*
++++ +++ Rr++gdLRp+ l
AM406670_0 301 LRTLDGGITLKRRIIGDLRPPLL 323

AM406670_2746: domain 1 of 1, from 482 to 544: score 44.4, E = 8.3e-13
*->IARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeirela
IARE HD++g +L+++kl+l +++ d ++ p+++r ++ + e +
AM406670_2 482 IAREVHDELGSTLTMLKLGLATVAD--D-ETTPPRIRNKFAGMLEQI 525

realaevRrllgdLRpaal<-*
+ al+ v r+ + LRpa+l
AM406670_2 526 DAALQTVKRISTSLRPATL 544


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 7 0|=
-13 24 0|===
-12 67 44|===*===
-11 135 365|============= *
-10 407 848|===================================== *
-9 594 963|====================================================== *
-8 566 742|==================================================== *
-7 580 466|==========================================*==========
-6 480 264|=======================*====================
-5 458 141|============*=============================
-4 225 73|======*==============
-3 158 38|===*===========
-2 110 19|=*========
-1 61 9|*=====
0 45 5|*====
1 18 2|*=
2 17 1|*=
3 10 0|=
4 8 0|=
5 3 0|=
6 3 0|=
7 4 0|=
8 1 0|=
9 0 0|
10 0 0|
11 1 0|=
> 12 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 3169.8132
P(chi-square) = 0

Total sequences searched: 3989

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: