Acidobacteria Actinobacteria Alphaproteobacteria
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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Mycobacterium bovis BCG str. Pasteur 1173P2  

Data for AM408590  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM408590.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM408590_1093 CDS_1188440-1186911 86.2 4.2e-24 1
AM408590_3829 CDS_4183411-4181984 83.7 2.1e-23 1
AM408590_3279 CDS_3579096-3577393 74.9 6.9e-21 1
AM408590_0812 CDS_884179-885636 73.5 1.7e-20 1
AM408590_0532 CDS_610224-611456 72.4 3.5e-20 1
AM408590_1088 CDS_1182171-1179589 65.2 3.9e-18 1
AM408590_1040 CDS_1127997-1129511 60.6 7.6e-17 1
AM408590_0956 CDS_1036315-1034975 54.0 5.7e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM408590_1093 1/1 277 344 .. 1 87 [] 86.2 4.2e-24
AM408590_3829 1/1 246 312 .. 1 87 [] 83.7 2.1e-23
AM408590_3279 1/1 295 362 .. 1 87 [] 74.9 6.9e-21
AM408590_0812 1/1 249 313 .. 1 87 [] 73.5 1.7e-20
AM408590_0532 1/1 157 223 .. 1 87 [] 72.4 3.5e-20
AM408590_1088 1/1 632 700 .. 1 87 [] 65.2 3.9e-18
AM408590_1040 1/1 239 311 .. 1 87 [] 60.6 7.6e-17
AM408590_0956 1/1 230 296 .. 1 87 [] 54.0 5.7e-15

Alignments of top-scoring domains:
AM408590_1093: domain 1 of 1, from 277 to 344: score 86.2, E = 4.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPL+aI+gyael + ++ ++l++ +
AM408590_1 277 RMRQFITDASHELRTPLAAIQGYAELTRQDS-------SDLPPTT-- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +i++ea+r+ L+++lL lsr+ +g
AM408590_1 315 ----------EYALARIESEARRMTLLVDELLLLSRLSEG 344

AM408590_3829: domain 1 of 1, from 246 to 312: score 83.7, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+aIrgy+el ++ ++e +
AM408590_3 246 RVRQFVADASHELRTPLAAIRGYTELTQR---------IGDDPEAV- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ +e+er+ rL++dlL l+r+++g
AM408590_3 283 ----------AHAMSRVASETERITRLVEDLLLLARLDSG 312

AM408590_3279: domain 1 of 1, from 295 to 362: score 74.9, E = 6.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + ++++l++
AM408590_3 295 LQRRFTSDVSHELRTPLTTVRMAADLIYD-------HSADLDPTL-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e + +e++r + L+ndlL++sr +ag
AM408590_3 333 ----------RRSTELMVSELDRFETLLNDLLEISRHDAG 362

AM408590_0812: domain 1 of 1, from 249 to 313: score 73.5, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+Irg+ael + ++ + ++
AM408590_0 249 RMRQFITDASHELRTPLTTIRGFAELYRQGA-----------ARDV- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i++ea r+ L++dlL l+r++a
AM408590_0 284 ----------GMLLSRIESEASRMGLLVDDLLLLARLDAH 313

AM408590_0532: domain 1 of 1, from 157 to 223: score 72.4, E = 3.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ a+ ++ae+Ll+ ++ ++e++
AM408590_0 157 ARRDFVANVSHELKTPVGAMALLAEALLA---------SADDSETV- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e++l ea+rl +++ +l +lsr++
AM408590_0 194 ----------RRFAEKVLIEANRLGDMVAELIELSRLQGA 223

AM408590_1088: domain 1 of 1, from 632 to 700: score 65.2, E = 3.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL+a + +++ L++ +d + s+e++
AM408590_1 632 LRRSLLSAVSHDLRTPLAAAKVAVSSLRT-------EDVAFSPEDT- 670

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++++++l +L+ +lLd sr+ ag
AM408590_1 671 ----------AELLATIEESIDQLTALVANLLDSSRLAAG 700

AM408590_1040: domain 1 of 1, from 239 to 311: score 60.6, E = 7.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ ++ HELRTPLt++r+++elL + + ++g + l+ +++
AM408590_1 239 RQARLVTDAGHELRTPLTSLRTNVELLMASM---APGAPRLPKQEM- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +l ++e l+ L+ dl dlsr +ag
AM408590_1 282 ----------VDLRADVLAQIEELSTLVGDLVDLSRGDAG 311

AM408590_0956: domain 1 of 1, from 230 to 296: score 54.0, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a sHELRTPLta+r+++e+L + +l+++qr
AM408590_0 230 SARDFAAVSSHELRTPLTAMRTNLEVLST---------LDLPDDQR- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++r r+++ ++ l l++ e
AM408590_0 267 ----------KEVLNDVIRTQSRIEATLSALERLAQGELS 296


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 2 0|=
-13 43 2|*===
-12 170 90|======*======
-11 391 468|============================ *
-10 717 869|==================================================== *
-9 781 897|======================================================== *
-8 674 672|===============================================*=
-7 479 423|==============================*====
-6 282 243|=================*===
-5 177 133|=========*===
-4 109 71|=====*==
-3 60 37|==*==
-2 29 19|=*=
-1 9 10|*
0 9 5|*
1 2 2|*
2 3 1|*
3 2 0|=
4 1 0|=
5 0 0|
> 6 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 191.5874
P(chi-square) = 1.77e-34

Total sequences searched: 3988

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: