Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Saccharopolyspora erythraea NRRL 2338  

Data for AM420293  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AM420293.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM420293_6242 CDS_7203308-7201815 119.5 1.4e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM420293_6242 1/1 300 382 .. 1 94 [] 119.5 1.4e-33

Alignments of top-scoring domains:
AM420293_6242: domain 1 of 1, from 300 to 382: score 119.5, E = 1.4e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r++ + e+ + aL+Es++RV S
AM420293_6 300 EIHHRVKNNLQTVAALLRLQSRRTGNSEA-----RLALEESVRRVTS 341

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+HE L++s d ++vd+++++++++ + + ++ + + +k +
AM420293_6 342 IALVHETLSMSVD-ERVDLDDVVDRVIPMMSDVAAAETG---VK--V 382


Histogram of all scores:
score obs exp (one = represents 34 sequences)
----- --- ---
-15 24 0|=
-14 59 0|==
-13 163 45|=*===
-12 492 472|=============*=
-11 2005 1316|======================================*====================
-10 1627 1703|================================================ *
-9 1025 1438|=============================== *
-8 850 965|========================= *
-7 363 573|=========== *
-6 307 319|=========*
-5 120 172|==== *
-4 72 91|==*
-3 53 47|=*
-2 19 24|*
-1 8 12|*
0 4 6|*
1 2 3|*
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 907.1445
P(chi-square) = 0

Total sequences searched: 7198

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: