hmmsearch - search a sequence database with a profile HMM

HMMER 2.3.2 (Oct 2003)

Copyright (C) 1992-2003 HHMI/Washington University School of Medicine

Freely distributed under the GNU General Public License (GPL)

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HMM file:                   /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]

Sequence database:          AM494475.Gprot.fsa

per-sequence score cutoff:  >= 60.0 [TC1]

per-domain score cutoff:    >= 60.0 [TC2]

per-sequence Eval cutoff:   [none]

per-domain Eval cutoff:     [none]

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Query HMM:   HWE_HK

Accession:   PF07536.4

Description: HWE histidine kinase

  [HMM has been calibrated; E-values are empirical estimates]



Scores for complete sequences (score includes all domains):

Sequence Description                                    Score    E-value  N 

-------- -----------                                    -----    ------- ---

	[no hits above thresholds]



Parsed for domains:

Sequence Domain  seq-f seq-t    hmm-f hmm-t      score  E-value

-------- ------- ----- -----    ----- -----      -----  -------

	[no hits above thresholds]



Alignments of top-scoring domains:

	[no hits above thresholds]



Histogram of all scores:

score    obs    exp  (one = represents 5 sequences)

-----    ---    ---

  -16      1      0|=                                                          

  -15      2      0|=                                                          

  -14     22      0|=====                                                      

  -13     43      0|=========                                                  

  -12    284      0|=========================================================  

  -11    163      9|=*===============================                          

  -10    210    122|========================*=================                 

   -9    129    302|==========================                                *

   -8    197    314|========================================                  *

   -7     60    210|============                             *                 

   -6     29    115|======                *                                    

   -5     20     57|====       *                                               

   -4      7     27|==   *                                                     

   -3      9     12|==*                                                        

   -2      2      5|*                                                          

   -1      1      2|*                                                          

    0      1      1|*                                                          

    1      0      0|                                                           

    2      1      0|=                                                          

    3      1      0|=                                                          





% Statistical details of theoretical EVD fit:

              mu =    -7.9989

          lambda =     0.7843

chi-sq statistic =  2852.8354

  P(chi-square)  =          0



Total sequences searched: 2179



Whole sequence top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K



Domain top hits:

tophits_s report:

     Total hits:           0

     Satisfying E cutoff:  0

     Total memory:         20K