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3 accessions found for Clavibacter michiganensis subsp. michiganensis NCPPB 382  

Data for AM711867  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM711867.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM711867_2794 CDS_3095713-3094037 83.0 2.7e-23 1
AM711867_2361 CDS_2636447-2635185 76.0 2.4e-21 1
AM711867_0715 CDS_788857-787367 74.3 7.4e-21 1
AM711867_2503 CDS_2791654-2793414 73.5 1.3e-20 1
AM711867_0484 CDS_546768-548468 67.7 5.6e-19 1
AM711867_1067 CDS_1203932-1205566 64.4 5e-18 1
AM711867_1269 CDS_1420874-1422520 59.0 1.6e-16 1
AM711867_2520 CDS_2809263-2808100 58.4 2.4e-16 1
AM711867_2783 CDS_3085448-3087994 52.8 9.7e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM711867_2794 1/1 295 362 .. 1 87 [] 83.0 2.7e-23
AM711867_2361 1/1 151 215 .. 1 87 [] 76.0 2.4e-21
AM711867_0715 1/1 273 339 .. 1 87 [] 74.3 7.4e-21
AM711867_2503 1/1 263 330 .. 1 87 [] 73.5 1.3e-20
AM711867_0484 1/1 334 404 .. 1 87 [] 67.7 5.6e-19
AM711867_1067 1/1 289 356 .. 1 87 [] 64.4 5e-18
AM711867_1269 1/1 323 390 .. 1 87 [] 59.0 1.6e-16
AM711867_2520 1/1 150 216 .. 1 87 [] 58.4 2.4e-16
AM711867_2783 1/1 604 672 .. 1 87 [] 52.8 9.7e-15

Alignments of top-scoring domains:
AM711867_2794: domain 1 of 1, from 295 to 362: score 83.0, E = 2.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f++++sHELRTPL++Irgyael ++ g + l+e+
AM711867_2 295 KVRRFVSDASHELRTPLASIRGYAELTRR-------GPHQLPEDV-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++e+ r+ +++dlL l+r+++g
AM711867_2 333 ----------THSLSRIESESVRMTTIVEDLLLLARLDEG 362

AM711867_2361: domain 1 of 1, from 151 to 215: score 76.0, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a +sH+LRTPL++Ir++ae L++ + ++e+
AM711867_2 151 SRRELIAWMSHDLRTPLAGIRAMAESLED---------GMVDDEH-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ i+ +a+rl+ +++dl +lsri +g
AM711867_2 187 -----------RYFRQIRVQANRLNGMVDDLFELSRINSG 215

AM711867_0715: domain 1 of 1, from 273 to 339: score 74.3, E = 7.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a+++HELRTP+++Ir+ a++L + t+ s+e+r
AM711867_0 273 RMRAFVADAAHELRTPVAGIRASADALVR---------TDPSAEER- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + rea r rL++d+L ++r+++g
AM711867_0 310 ----------ERLAVHVVREAIRAGRLVDDMLMMARLDEG 339

AM711867_2503: domain 1 of 1, from 263 to 330: score 73.5, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPL ++rgyael ++++ +++e++
AM711867_2 263 QMRRFVGDASHELRTPLVSVRGYAELYRMGA--------LQTPEDV- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i++ea r+ L++dlL+l+r+++
AM711867_2 301 ----------SQAMERIEKEAIRMGGLVEDLLELARLDET 330

AM711867_0484: domain 1 of 1, from 334 to 404: score 67.7, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHEL+TPLt+I+gy+el+ ++l +e + ++r+
AM711867_0 334 EREDFVASVSHELKTPLTSILGYVELIADDL-------EEDDLDDRI 373

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++R l +++r a+rll Li dlL+ ++
AM711867_0 374 TAAR---------LAIVERNAQRLLGLIGDLLTAAQHKLA 404

AM711867_1067: domain 1 of 1, from 289 to 356: score 64.4, E = 5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir++ +L + +++ s++
AM711867_1 289 LQQRFVSDVSHELRTPLTTIRLAGGVLYD-------LREDFSPPA-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ ++er + L+ dlL++sr +ag
AM711867_1 327 ----------ARSAELLHTQVERFETLLADLLEISRFDAG 356

AM711867_1269: domain 1 of 1, from 323 to 390: score 59.0, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efla++sHELRTPLt+I gy++lL e + ++e
AM711867_1 323 VRDEFLATVSHELRTPLTSIVGYLDLLDE---------LHDPAEL-- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e l +i+r + +l+++i lL+ +
AM711867_1 359 --------GIQEELAVIQRNVAQLSSIIGSLLEGADHAPA 390

AM711867_2520: domain 1 of 1, from 150 to 216: score 58.4, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ ++ae+L + ++ q+
AM711867_2 150 VRRDFVANISHELKTPIGAVGLLAEALDS---------CADDAVQV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++ e+ rl r+ +++ +lsr+ea
AM711867_2 187 ----------RRFAARLTTESARLARITQEIIELSRLEAA 216

AM711867_2783: domain 1 of 1, from 604 to 672: score 52.8, E = 9.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LR PL+a +++ +L+ +g t ++ +
AM711867_2 604 VRTALLSAVSHDLRRPLSAATAAVTALRS------PGMTWADGDR-- 642

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t+++++ l +L+ dlLd sr +ag
AM711867_2 643 ----------EELLATAEESLGTLADLVTDLLDVSRVQAG 672


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 5 0|=
-13 32 2|*==
-12 115 68|======*====
-11 244 353|======================= *
-10 482 656|============================================ *
-9 624 677|========================================================= *
-8 569 507|==============================================*=====
-7 365 319|============================*=====
-6 245 184|================*======
-5 135 100|=========*===
-4 67 54|====*==
-3 52 28|==*==
-2 18 14|=*
-1 9 7|*
0 8 4|*
1 2 2|*
> 2 11 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 185.4373
P(chi-square) = 7.719e-34

Total sequences searched: 3008

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: