Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia cenocepacia J2315  

Data for AM747720  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM747720.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM747720_1273 CDS_1387398-1388717 93.4 3.4e-26 1
AM747720_2376 CDS_2635801-2632958 70.0 1.5e-19 1
AM747720_0953 CDS_1040209-1038662 66.1 1.9e-18 1
AM747720_2219 CDS_2459278-2458136 61.1 5.1e-17 1
AM747720_2825 CDS_3109473-3108127 59.8 1.2e-16 1
AM747720_0007 CDS_8329-6845 55.9 1.5e-15 1
AM747720_2602 CDS_2865127-2863811 53.1 9.1e-15 1
AM747720_1678 CDS_1844276-1845655 50.9 3.7e-14 1
AM747720_1342 CDS_1479790-1478399 49.6 9e-14 1
AM747720_3502 CDS_3838204-3836837 47.4 3.8e-13 1
AM747720_2206 CDS_2440930-2443446 42.8 7.6e-12 1
AM747720_2007 CDS_2219712-2221073 40.2 4e-11 1
AM747720_0477 CDS_520018-522381 38.6 1.1e-10 1
AM747720_0727 CDS_788587-790596 34.4 1.8e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM747720_1273 1/1 206 272 .. 1 87 [] 93.4 3.4e-26
AM747720_2376 1/1 678 756 .. 1 87 [] 70.0 1.5e-19
AM747720_0953 1/1 281 346 .. 1 87 [] 66.1 1.9e-18
AM747720_2219 1/1 152 220 .. 1 87 [] 61.1 5.1e-17
AM747720_2825 1/1 213 278 .. 1 87 [] 59.8 1.2e-16
AM747720_0007 1/1 240 305 .. 1 87 [] 55.9 1.5e-15
AM747720_2602 1/1 220 278 .. 1 87 [] 53.1 9.1e-15
AM747720_1678 1/1 231 296 .. 1 87 [] 50.9 3.7e-14
AM747720_1342 1/1 207 272 .. 1 87 [] 49.6 9e-14
AM747720_3502 1/1 235 301 .. 1 87 [] 47.4 3.8e-13
AM747720_2206 1/1 588 658 .. 1 87 [] 42.8 7.6e-12
AM747720_2007 1/1 234 293 .. 1 87 [] 40.2 4e-11
AM747720_0477 1/1 524 596 .. 1 87 [] 38.6 1.1e-10
AM747720_0727 1/1 420 482 .. 1 81 [. 34.4 1.8e-09

Alignments of top-scoring domains:
AM747720_1273: domain 1 of 1, from 206 to 272: score 93.4, E = 3.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+ee+r
AM747720_1 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLNEEDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ ++++a r+++++ dlL l+++e +
AM747720_1 243 ----------ARYLDMMEQQASRMRHIVTDLLVLAKLEGE 272

AM747720_2376: domain 1 of 1, from 678 to 756: score 70.0, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L + g++++ + +++
AM747720_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAN-------GRAAAQAGDAA 717

peLR....ledpeyreyletilreaerllrLindlLdlsrieag<-*
++R +++ e+++ i++ea r+ ++ +lLd++r++ag
AM747720_2 718 AAARlaqrE-----GELVDAIHDEALRMTGIVTNLLDMARLQAG 756

AM747720_0953: domain 1 of 1, from 281 to 346: score 66.1, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae + + ++ +++
AM747720_0 281 LQKRFIADAAHQMKTPLAGLRTQAEFAMR---------HPVPPDV-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
AM747720_0 317 ----------QRSLEQIATSSEQAARLVTQLLALARAENR 346

AM747720_2219: domain 1 of 1, from 152 to 220: score 61.1, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el +e+ ++
AM747720_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERGEL- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
AM747720_2 191 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

AM747720_2825: domain 1 of 1, from 213 to 278: score 59.8, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ ++
AM747720_2 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDDASR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ +++ + r rL ++lL l+r+e
AM747720_2 249 ----------REAIADLQDGVSRATRLTEQLLALARAEPD 278

AM747720_0007: domain 1 of 1, from 240 to 305: score 55.9, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + ++++ q+
AM747720_0 240 AQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDPHQT- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++ +a+r rL n+lL l+r+e g
AM747720_0 276 ----------FAAVRELRAAADRAVRLSNQLLSLARAEPG 305

AM747720_2602: domain 1 of 1, from 220 to 278: score 53.1, E = 9.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
AM747720_2 220 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + r++++++++++++L ++ +a
AM747720_2 249 ----------ARLRDGVVRDVDSMSHIVDQFLVFAHGGAD 278

AM747720_1678: domain 1 of 1, from 231 to 296: score 50.9, E = 3.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+ +++HELR PL+a+++ ae++l+ ++ ++++
AM747720_1 231 TERRFIGDAAHELRIPLAALSAQAEVALR---------ADSPADK-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++ +er rL +lL+l+r++ag
AM747720_1 267 ----------DAALRRLATGVERSARLSAQLLELARLDAG 296

AM747720_1342: domain 1 of 1, from 207 to 272: score 49.6, E = 9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ ++sHEL+TPL+ + + + lL + ++ +
AM747720_1 207 QQREMMHGISHELKTPLARLEFGLALLAD---------PDETGRM-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + ++r+++ l++L+ +lL++ r+e+g
AM747720_1 243 ----------RERRDALRRDVRELDELVTELLTIGRLEQG 272

AM747720_3502: domain 1 of 1, from 235 to 301: score 47.4, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP++++ + ++ ++ ++ ++
AM747720_3 235 TQRRFIADAAHQLRTPIAVLDTQIQYAQQ---------RGNDDREL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+++ + + + lL l+ +ea
AM747720_3 272 ----------ASVLDSMQRSSRKMADVTDKLLLLAHAEAT 301

AM747720_2206: domain 1 of 1, from 588 to 658: score 42.8, E = 7.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ ++e++
AM747720_2 588 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRGTPETL- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
AM747720_2 629 ----------QPALEKTAQQALRAGMIVKRIREFVKRSEP 658

AM747720_2007: domain 1 of 1, from 234 to 293: score 40.2, E = 4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
AM747720_2 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
AM747720_2 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPSQR 293

AM747720_0477: domain 1 of 1, from 524 to 596: score 38.6, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++l +++ +
AM747720_0 524 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL------SDKLAPPD-A 563

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++ i +++ + r+++d+++++r
AM747720_0 564 DVL-------KRGATMIVNQVAAMKRMVDDFREYARTPPA 596

AM747720_0727: domain 1 of 1, from 420 to 482: score 34.4, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
AM747720_0 420 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 458

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
AM747720_0 459 ----------RENLEAIAALTERMGKITNQLKLF 482


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 36 2|*==
-12 122 79|======*====
-11 291 411|========================= *
-10 547 762|============================================== *
-9 684 787|========================================================= *
-8 630 589|=================================================*===
-7 484 371|==============================*==========
-6 288 213|=================*======
-5 167 117|=========*====
-4 91 62|=====*==
-3 41 33|==*=
-2 31 17|=*=
-1 19 9|*=
0 7 4|*
1 3 2|*
2 3 1|*
3 0 0|
> 4 18 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 252.1131
P(chi-square) = 0

Total sequences searched: 3536

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: