Crenarchaeota Euryarchaeota Nanoarchaeota
Other Archaea
Classification of phyla is from NCBI page
Search:
54 projects found  

5 accessions found for Halobacterium salinarum R1  

Data for AM774415  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM774415.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM774415_1868 CDS_1733021-1729116 63.4 6.8e-18 1
AM774415_0604 CDS_546570-548483 60.0 6.3e-17 2
AM774415_0950 CDS_878782-876956 58.3 1.8e-16 1
AM774415_0741 CDS_687640-685343 56.8 4.8e-16 1
AM774415_0587 CDS_532315-530687 40.1 2.6e-11 1
AM774415_1616 CDS_1493452-1491932 39.6 3.7e-11 1
AM774415_1737 CDS_1601475-1599808 38.4 8e-11 1
AM774415_1106 CDS_1016190-1018010 27.8 8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM774415_1868 1/1 1100 1161 .. 1 87 [] 63.4 6.8e-18
AM774415_0604 2/2 430 491 .. 1 87 [] 59.4 8.9e-17
AM774415_0950 1/1 400 461 .. 1 87 [] 58.3 1.8e-16
AM774415_0741 1/1 544 605 .. 1 87 [] 56.8 4.8e-16
AM774415_0587 1/1 322 391 .. 1 87 [] 40.1 2.6e-11
AM774415_1616 1/1 305 365 .. 1 87 [] 39.6 3.7e-11
AM774415_1737 1/1 344 412 .. 1 87 [] 38.4 8e-11
AM774415_1106 1/1 391 455 .. 1 87 [] 27.8 8e-08

Alignments of top-scoring domains:
AM774415_1868: domain 1 of 1, from 1100 to 1161: score 63.4, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++H+LR+PL++ g++++ + +
AM774415_1 1100 RLDQFASVVAHDLRNPLSVATGFLDIVAD-------------TGE-- 1131

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl++i+++ +r+ rLi+dlL+l+ e+
AM774415_1 1132 ----------LEYLDRIESAHDRMARLIDDLLTLASGEST 1161

AM774415_0604: domain 2 of 2, from 430 to 491: score 59.4, E = 8.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR PL++ +g +el+++ +
AM774415_0 430 RLEQFASIVSHDLRSPLNVAKGSLELARN-------------TGE-- 461

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ ++++r+++L++d+L lsr ++
AM774415_0 462 ----------HQHFDRAADALDRMDSLVEDVLALSRQGEL 491

AM774415_0950: domain 1 of 1, from 400 to 461: score 58.3, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH++R+PL++ +g +el+ + +e+
AM774415_0 400 RLEDFASIVSHDIRNPLNVASGSLELAAD----------SGAPEH-- 434

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +r++er+++L++dlL l+r +
AM774415_0 435 -------------FDRCRRAIERMNALVDDLLVLARTGCS 461

AM774415_0741: domain 1 of 1, from 544 to 605: score 56.8, E = 4.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR PL++ rg +el++e + +e+
AM774415_0 544 RLEEFASIVSHDLRSPLNVARGRVELAEE----------TGASEH-- 578

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++r+ Li+d+L l+r ++
AM774415_0 579 -------------FDRATQALDRMGTLIEDVLALARHGNS 605

AM774415_0587: domain 1 of 1, from 322 to 391: score 40.1, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+LR PL+a +g+++l+ e ld + ++ +
AM774415_0 322 RLGEFAGVVSHDLRSPLNAASGHLDLAAEHLD------AGDTDGRA- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e ++ +++r+ +L+ + +l+ +
AM774415_0 362 ----------SDAIENAHAAIDRMTDLVAGVHELAAQGDV 391

AM774415_1616: domain 1 of 1, from 305 to 365: score 39.6, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR PL + r+++ l+++ ++
AM774415_1 305 QLERFASIVSHDLRDPLQTARATVALAKA---------GD------- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l + +++r+++Li d+L+l++ ++
AM774415_1 336 ----------DDALTDLTAALDRMDALIADVLTLAKHGQT 365

AM774415_1737: domain 1 of 1, from 344 to 412: score 38.4, E = 8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++ HELR+ + + +gy+ + +l +e +
AM774415_1 344 QLEGFAAGVNHELRNAIQVASGYTAQAAS----------ALESENVT 380

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ l ++ ++++r+ + +ndl +l+r +
AM774415_1 381 DA--------QQSLARVSDAVDRMADRVNDLSTLARHGRT 412

AM774415_1106: domain 1 of 1, from 391 to 455: score 27.8, E = 8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + l+H++R+ L +++ya++L el+ e+
AM774415_1 391 NLDVLNQVLRHDIRNDLQLVLAYADMLAG----------ELDGEH-- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e++l++a++ +L +d++
AM774415_1 426 ----------ADYIERVLESADHAVELTKTARDIADVMLT 455


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 43 1|*======
-12 130 48|======*============
-11 272 250|===================================*===
-10 370 464|===================================================== *
-9 388 479|======================================================== *
-8 345 358|================================================== *
-7 222 226|================================*
-6 148 130|==================*===
-5 66 71|==========*
-4 37 38|=====*
-3 37 20|==*===
-2 13 10|=*
-1 11 5|*=
0 8 2|*=
1 1 1|*
2 2 0|=
3 3 0|=
> 4 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 200.4482
P(chi-square) = 6.005e-37

Total sequences searched: 2136

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: