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5 accessions found for Halobacterium salinarum R1  

Data for AM774416  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM774416.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM774416_0034 CDS_30596-28077 57.7 2.3e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM774416_0034 1/1 638 699 .. 1 87 [] 57.7 2.3e-17

Alignments of top-scoring domains:
AM774416_0034: domain 1 of 1, from 638 to 699: score 57.7, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ g +el+ e ++ +e+
AM774416_0 638 RLDEFASVVSHDLRNPLNVAEGRLELAME----------NCESEH-- 672

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++r+++Li+d+L l+r+++
AM774416_0 673 -------------HDSVAQSLDRMESLIDDVLSLARAGEA 699


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 2 0|==
-12 16 3|==*=============
-11 15 18|=============== *
-10 19 33|=================== *
-9 31 34|=============================== *
-8 25 25|========================*
-7 14 16|============== *
-6 13 9|========*====
-5 8 5|====*===
-4 2 2|=*
-3 3 1|*==
> -2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 10.4307
P(chi-square) = 0.1076

Total sequences searched: 174

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: