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5 accessions found for Halobacterium salinarum R1  

Data for AM774417  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM774417.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM774417_0096 CDS_71479-69995 66.5 9.6e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM774417_0096 1/1 291 352 .. 1 87 [] 66.5 9.6e-20

Alignments of top-scoring domains:
AM774417_0096: domain 1 of 1, from 291 to 352: score 66.5, E = 9.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a +sH+LR+PL+ I gy++lL+e e ++e+
AM774417_0 291 RLDEFAAIVSHDLRNPLSIIGGYLQLLQE----------EHDSEH-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
let+ ++ r++ Li+dlL l+r +
AM774417_0 326 -------------LETMAEAHGRMETLIEDLLSLARHGDD 352


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 1 0|=
-13 5 0|=====
-12 19 4|===*===============
-11 21 23|===================== *
-10 33 43|================================= *
-9 37 45|===================================== *
-8 25 34|========================= *
-7 23 21|====================*==
-6 17 12|===========*=====
-5 7 6|=====*=
-4 6 3|==*===
> -3 6 -|======


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 8.8854
P(chi-square) = 0.1801

Total sequences searched: 230

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: