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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Clavibacter michiganensis subsp. sepedonicus  

Data for AM849034  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AM849034.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM849034_0674 CDS_726853-728355 103.1 2.9e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM849034_0674 1/1 303 388 .. 1 94 [] 103.1 2.9e-29

Alignments of top-scoring domains:
AM849034_0674: domain 1 of 1, from 303 to 388: score 103.1, E = 2.9e-29
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+++SLLr+Qar++ ee+ +eaL +q+RV +
AM849034_0 303 EIHHRVKNNLQTVASLLRIQARRSHTEEA-----REALGHAQRRVGA 344

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A +H+ L+++ + +vdf++++++++ + + ++ + +++ k +
AM849034_0 345 IAVVHDTLSEGLN-QNVDFDAVFDRVLLLIAEVASAHNTRVHPK--I 388


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 4 0|=
-14 23 0|==
-13 59 18|=*==
-12 174 193|============*
-11 861 538|===================================*======================
-10 645 696|=========================================== *
-9 414 588|============================ *
-8 343 394|======================= *
-7 152 234|=========== *
-6 188 130|========*====
-5 37 70|=== *
-4 21 37|==*
-3 13 19|=*
-2 3 10|*
-1 2 5|*
0 2 2|*
1 0 1|*
2 0 0|
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 426.3207
P(chi-square) = 0

Total sequences searched: 3057

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: