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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Gluconacetobacter diazotrophicus PAl 5  

Data for AM889285  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM889285.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM889285_3818 CDS_3901730-3902938 73.6 1.6e-20 1
AM889285_1566 CDS_1570069-1572753 69.8 1.8e-19 1
AM889285_1265 CDS_1261530-1263308 69.4 2.4e-19 1
AM889285_1511 CDS_1520963-1519578 60.8 6.6e-17 1
AM889285_0257 CDS_268202-267012 57.1 7.2e-16 1
AM889285_2266 CDS_2326693-2325584 56.4 1.2e-15 1
AM889285_2264 CDS_2324006-2321790 49.5 1e-13 1
AM889285_3079 CDS_3177870-3176467 44.2 3.2e-12 1
AM889285_3286 CDS_3379789-3377924 39.4 7.7e-11 1
AM889285_0674 CDS_680985-682424 34.4 2e-09 1
AM889285_1389 CDS_1394402-1395793 32.9 5.3e-09 1
AM889285_1455 CDS_1457749-1456202 32.1 8.7e-09 1
AM889285_3419 CDS_3522033-3520630 31.5 1.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM889285_3818 1/1 158 225 .. 1 87 [] 73.6 1.6e-20
AM889285_1566 1/1 666 734 .. 1 87 [] 69.8 1.8e-19
AM889285_1265 1/1 360 425 .. 1 87 [] 69.4 2.4e-19
AM889285_1511 1/1 236 301 .. 1 87 [] 60.8 6.6e-17
AM889285_0257 1/1 172 235 .. 1 87 [] 57.1 7.2e-16
AM889285_2266 1/1 137 201 .. 1 87 [] 56.4 1.2e-15
AM889285_2264 1/1 502 573 .. 1 87 [] 49.5 1e-13
AM889285_3079 1/1 260 327 .. 1 87 [] 44.2 3.2e-12
AM889285_3286 1/1 245 312 .. 1 87 [] 39.4 7.7e-11
AM889285_0674 1/1 241 307 .. 1 87 [] 34.4 2e-09
AM889285_1389 1/1 244 302 .. 1 87 [] 32.9 5.3e-09
AM889285_1455 1/1 246 312 .. 1 87 [] 32.1 8.7e-09
AM889285_3419 1/1 232 298 .. 1 87 [] 31.5 1.3e-08

Alignments of top-scoring domains:
AM889285_3818: domain 1 of 1, from 158 to 225: score 73.6, E = 1.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+a+ g++e+L+ ++ ++ q
AM889285_3 158 MRTDFVAYASHELRTPLAALTGFIETLRG-------PAADDPPAQ-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +a r++rL+++lL lsr +
AM889285_3 196 ----------QRFLGVMAGQAARMQRLLDRLLMLSRVQMS 225

AM889285_1566: domain 1 of 1, from 666 to 734: score 69.8, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL++I+g+a+ L + d+ l+ ++r
AM889285_1 666 LRGALLSSISHDLRTPLSSILGAASSLDSY-------DALLDKKDR- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++eaerl+r + +lLd++r+eag
AM889285_1 705 ----------KELLTTIREEAERLSRFVANLLDMTRLEAG 734

AM889285_1265: domain 1 of 1, from 360 to 425: score 69.4, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++sHE+++PL++Ir ++e+L + e q
AM889285_1 360 AIERFAADVSHEIKNPLSSIRSAIETLVR---------IEDLNRQ-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i ++++rl+rLi d+ d sr +a+
AM889285_1 396 ----------RRLLSIINDDVRRLDRLITDISDASRVDAE 425

AM889285_1511: domain 1 of 1, from 236 to 301: score 60.8, E = 6.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+an++HELR+P+ a++g a++L+e+l +e ++ r
AM889285_1 236 SERAFAANAAHELRNPIGALLGQAQMLREQL-------HEPEAPAR- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++rl r+ + lL+lsr+ +g
AM889285_1 275 -------------AAAMIAQIRRLGRMTEKLLQLSRASSG 301

AM889285_0257: domain 1 of 1, from 172 to 235: score 57.1, E = 7.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL +I + +Ll++ +e +
AM889285_0 172 LREQFIAVLGHDLRNPLMSIESGTRMLLRY------------PERA- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i++++ r+ +Lindl+d++r + g
AM889285_0 206 ----------AELVPHIQKSTARMGALINDLMDFARGRLG 235

AM889285_2266: domain 1 of 1, from 137 to 201: score 56.4, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s ++a l+HE ++PL++Irg+a+lL+ e +
AM889285_2 137 SVSGMAAILAHEVKNPLSGIRGAAQLLES----------SVAEGD-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ i++ea+r+++L++++ +s +
AM889285_2 172 ----------RELAVLIRDEADRIRDLVERMEMFSDKPLE 201

AM889285_2264: domain 1 of 1, from 502 to 573: score 49.5, E = 1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ +++ + ++e+
AM889285_2 502 AWADVARRIAHEIKNPLTPIQLAAERLKRRF----LREITSDPET-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +ti r + + r+++++ ++r+ ++
AM889285_2 543 ---------FSQCADTIVRHVGDIGRMVDEFSAFARMPQP 573

AM889285_3079: domain 1 of 1, from 260 to 327: score 44.2, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sH+LRTPLt +r+ + ++ ++ ++e +
AM889285_3 260 QRTAVLAGVSHDLRTPLTRLRLSLAMIPH--------QGAIDAEML- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++ ++ ++r+i+ L ++r e
AM889285_3 298 ----------RADVADMIGDIAEMERMIESYLSFARGEGA 327

AM889285_3286: domain 1 of 1, from 245 to 312: score 39.4, E = 7.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ Lta++g +el+ + + + l+e +
AM889285_3 245 ALGTMAGGIAHDFNNLLTAVMGSLELATDMA-------DGLDERT-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ + +a+r +L ++lL +sr +
AM889285_3 283 ----------AHLLDNAMAAARRGAELTRRLLNFSRPRDL 312

AM889285_0674: domain 1 of 1, from 241 to 307: score 34.4, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++R PL+ +r +e++ ++ +++
AM889285_0 241 SLQQVSNDIAHDMRRPLSRLRQRLEAASV---------ADHTPDA-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r +e + +++++ l++ + lL ls+iea
AM889285_0 277 ---------FRATIEDAVEDLDSALEIFSSLLRLSQIEAA 307

AM889285_1389: domain 1 of 1, from 244 to 302: score 32.9, E = 5.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e la++sH+LRTPL+ +r+ a L +
AM889285_1 244 DRTEALAAVSHDLRTPLARLRLRAGFLDD------------------ 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i++++ +++++ +L + e+
AM889285_1 273 ----------PEVQGAIESDVAEMEAMVGGVLAYLSGEND 302

AM889285_1455: domain 1 of 1, from 246 to 312: score 32.1, E = 8.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++H+LRTP+t r+ +e + e ++ +e ++
AM889285_1 246 GVRQVSNSIAHDLRTPITRARTQLEDAAE---------HASGEGEL- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++ ++ + + lL +++ieag
AM889285_1 283 ----------RAAIDRAVGHLDNVTAVFEALLRIAQIEAG 312

AM889285_3419: domain 1 of 1, from 232 to 298: score 31.5, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +++H+LRTPL+ +r+ ++ +l + ++ +
AM889285_3 232 EIRDVGNDIAHDLRTPLARVRARLDRALS---------GQVDALAL- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++++++++ i lL l+ ie+g
AM889285_3 269 ----------KDVIARAIDDLDQSFLVITALLRLAEIENG 298


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 2 0|=
-14 25 0|==
-13 62 2|*====
-12 200 86|======*=========
-11 344 448|=========================== *
-10 566 831|============================================ *
-9 761 858|==========================================================*
-8 629 642|=================================================*
-7 499 405|===============================*=======
-6 303 233|=================*======
-5 180 127|=========*====
-4 95 68|=====*==
-3 39 36|==*
-2 29 18|=*=
-1 13 9|*
0 8 5|*
> 1 26 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 351.8609
P(chi-square) = 0

Total sequences searched: 3864

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: