Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Gluconacetobacter diazotrophicus PAl 5  

Data for AM889285  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM889285.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM889285_1194 CDS_1188758-1189864 61.0 1e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM889285_1194 1/1 180 239 .. 1 62 [. 61.0 1e-17

Alignments of top-scoring domains:
AM889285_1194: domain 1 of 1, from 180 to 239: score 61.0, E = 1e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIAR+LHD++g +L++ +l+++la+rl+ ++d+e+a+++++++
AM889285_1 180 ERERIARDLHDVIGRALTLTALKADLAARLA--PRDAEAAEAEMRAV 224

relarealaevRrll<-*
++lare+lae+R++l
AM889285_1 225 AALAREGLAEIRAAL 239


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 22 0|==
-13 43 0|====
-12 78 42|===*====
-11 152 346|============== *
-10 377 804|=================================== *
-9 622 913|========================================================= *
-8 566 703|==================================================== *
-7 566 442|========================================*===========
-6 395 250|======================*=============
-5 375 134|============*======================
-4 224 70|======*==============
-3 129 36|===*========
-2 85 18|=*======
-1 61 9|*=====
0 37 4|*===
1 17 2|*=
2 11 1|*
3 7 0|=
4 3 0|=
5 3 0|=
6 1 0|=
7 3 0|=
8 0 0|
9 1 0|=
10 0 0|
> 11 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2137.5198
P(chi-square) = 0

Total sequences searched: 3864

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: