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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

1 accessions found for Bordetella petrii DSM 12804  

Data for AM902716  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM902716.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM902716_0481 CDS_521565-520267 88.2 1.5e-24 1
AM902716_4492 CDS_4723008-4720954 82.3 6.7e-23 1
AM902716_4489 CDS_4717812-4719611 78.3 9.6e-22 1
AM902716_2476 CDS_2590143-2588677 71.2 9.5e-20 1
AM902716_4630 CDS_4870545-4871891 69.4 3.1e-19 1
AM902716_2063 CDS_2145186-2143810 65.7 3.6e-18 1
AM902716_4613 CDS_4852618-4851236 61.7 4.6e-17 1
AM902716_2287 CDS_2359273-2360340 56.9 1.1e-15 1
AM902716_3456 CDS_3636111-3637712 56.0 1.9e-15 1
AM902716_2702 CDS_2825539-2824382 51.8 3e-14 1
AM902716_2021 CDS_2099110-2097875 50.7 6e-14 1
AM902716_4730 CDS_4972434-4970113 48.6 2.4e-13 1
AM902716_0667 CDS_739057-740592 47.4 5.2e-13 1
AM902716_5004 CDS_5251394-5249817 45.8 1.5e-12 1
AM902716_4035 CDS_4244138-4242837 44.5 3.4e-12 1
AM902716_3031 CDS_3164806-3166560 40.4 5.1e-11 1
AM902716_3945 CDS_4140496-4145994 39.6 8.5e-11 1
AM902716_1707 CDS_1753567-1752173 36.5 6.7e-10 1
AM902716_4786 CDS_5034852-5032810 35.6 1.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM902716_0481 1/1 203 272 .. 1 87 [] 88.2 1.5e-24
AM902716_4492 1/1 247 312 .. 1 87 [] 82.3 6.7e-23
AM902716_4489 1/1 229 295 .. 1 87 [] 78.3 9.6e-22
AM902716_2476 1/1 265 333 .. 1 87 [] 71.2 9.5e-20
AM902716_4630 1/1 223 289 .. 1 87 [] 69.4 3.1e-19
AM902716_2063 1/1 226 291 .. 1 87 [] 65.7 3.6e-18
AM902716_4613 1/1 235 301 .. 1 87 [] 61.7 4.6e-17
AM902716_2287 1/1 125 181 .. 1 78 [. 56.9 1.1e-15
AM902716_3456 1/1 167 233 .. 1 87 [] 56.0 1.9e-15
AM902716_2702 1/1 153 218 .. 1 87 [] 51.8 3e-14
AM902716_2021 1/1 193 258 .. 1 87 [] 50.7 6e-14
AM902716_4730 1/1 514 586 .. 1 87 [] 48.6 2.4e-13
AM902716_0667 1/1 263 328 .. 1 87 [] 47.4 5.2e-13
AM902716_5004 1/1 289 354 .. 1 87 [] 45.8 1.5e-12
AM902716_4035 1/1 212 278 .. 1 87 [] 44.5 3.4e-12
AM902716_3031 1/1 351 421 .. 1 87 [] 40.4 5.1e-11
AM902716_3945 1/1 1605 1675 .. 1 87 [] 39.6 8.5e-11
AM902716_1707 1/1 238 297 .. 1 87 [] 36.5 6.7e-10
AM902716_4786 1/1 443 520 .. 1 87 [] 35.6 1.2e-09

Alignments of top-scoring domains:
AM902716_0481: domain 1 of 1, from 203 to 272: score 88.2, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ g++e+L++ ++l++eqr
AM902716_0 203 TRRDFVANVSHELRTPLTVLAGFLETLRD------MPADALDDEQR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + ++++a+r++++++dlL+ls +e+
AM902716_0 243 ----------EQYMSMMHEQAQRMQAIVEDLLTLSTLESS 272

AM902716_4492: domain 1 of 1, from 247 to 312: score 82.3, E = 6.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fla++sHE+RTPL++I+g+++l++e t l q
AM902716_4 247 AKARFLAAMSHEIRTPLATIIGALDLMRE---------TGLQTGQ-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + ++++a+ l ++i d+Ld+sr+e+g
AM902716_4 283 ----------RQHYQLADDAARLLMEIIGDILDFSRLESG 312

AM902716_4489: domain 1 of 1, from 229 to 295: score 78.3, E = 9.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sH++RTP++aI+g++el l ++ + +
AM902716_4 229 AKSTFLASISHDIRTPMNAIMGMLELTLL---------QDSLAAAA- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le +l++a++ll+Li+dlLdls++eag
AM902716_4 266 ----------RQQLEMALQSARSLLALIDDLLDLSKMEAG 295

AM902716_2476: domain 1 of 1, from 265 to 333: score 71.2, E = 9.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sH+LRTPLt++ gy+e+L+ +d++l +++r
AM902716_2 265 QRRDLVANISHDLRTPLTSLHGYLETLRF-------KDEALQPDER- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+t+l +++ rL ++l +l+r+e+g
AM902716_2 304 ----------RRYLDTALGQSRKVGRLAQELFELARLESG 333

AM902716_4630: domain 1 of 1, from 223 to 289: score 69.4, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++g +el+l t +s +
AM902716_4 223 QMEGFNADVAHELRTPLATLIGETELALS---------TRMSRTGL- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l + l+e++r++ ++nd+L ls+++ g
AM902716_4 260 ----------QETLGSNLEELQRMSGIVNDMLFLSQADRG 289

AM902716_2063: domain 1 of 1, from 226 to 291: score 65.7, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+++r+ ael+l+ ++s++++
AM902716_2 226 AQRRFVADAAHQLKTPLAGLRTQAELALR----------DASPDEM- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + +er rL+n+lL l+r+e++
AM902716_2 262 ----------QSSLRQLVMGSERATRLVNQLLLLARAENP 291

AM902716_4613: domain 1 of 1, from 235 to 301: score 61.7, E = 4.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL++++ +e+ l +e+s e++
AM902716_4 235 QMEGFNADVAHELRTPLATLINGTEVTLS---------SERSIEEL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ + l+e++ l +Lind+L l+r++ g
AM902716_4 272 ----------RDVMASNLEELHGLKALINDMLFLARADGG 301

AM902716_2287: domain 1 of 1, from 125 to 181: score 56.9, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+l+nl+HE ++PL ++rg+a+lL++ el++ +
AM902716_2 125 AHRELLRNLAHEVKNPLGGLRGAAQLLEA----------ELPSAAL- 160

peLRledpeyreyletilreaerllrLindl<-*
+ey+++i++ea+rl+ L+++l
AM902716_2 161 ----------AEYTQVIISEADRLQVLVDRL 181

AM902716_3456: domain 1 of 1, from 167 to 233: score 56.0, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ L +Irg aelL+ + ls+ +r
AM902716_3 167 ALGLLTGGVAHDFNNLLMVIRGSAELLRQ---------PGLSDSKR- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i + ++r +L ++lL ++r +
AM902716_3 204 ----------QQYIDAISSTSDRAAHLTRQLLAYARKQPL 233

AM902716_2702: domain 1 of 1, from 153 to 218: score 51.8, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ +++H+LRTPL+++r+ +el+l +l+++
AM902716_2 153 AQRRFIGHAAHQLRTPLSGLRMESELMLS---------RPLPDDV-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r e+i+ ++r+ rL ++lL l+r + +
AM902716_2 189 ----------RARAERIKAVSDRMIRLGQQLLVLARSDPN 218

AM902716_2021: domain 1 of 1, from 193 to 258: score 50.7, E = 6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL+a+ ++ael+++ + s
AM902716_2 193 RERRFIADAAHELRTPLAALTTHAELARD---------ASESGSR-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +l a+r rL ++lLd +r++a
AM902716_2 229 ----------QVALDGLLAVARRATRLSEQLLDQARLDAI 258

AM902716_4730: domain 1 of 1, from 514 to 586: score 48.6, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L ++l + l + +r
AM902716_4 514 AWGEVARRLAHEIKNPLTPIQLSAERLAMKLA------DRLQPADR- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ti +++ +l ++++d+++++r
AM902716_4 554 -------QMLERSTNTIVNQVGSLKQMVDDFREYARTPPA 586

AM902716_0667: domain 1 of 1, from 263 to 328: score 47.4, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+fla++sH+LRTPL+ +++ a+ +l+ e +++ +
AM902716_0 263 EQSQFLADASHQLRTPLAIMLTQAQYALR----------EPDPKRA- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i +++ r +rL ++lL l+ + +
AM902716_0 299 ----------QEGLRAIVDQLGRTRRLTEQLLSLAHASQA 328

AM902716_5004: domain 1 of 1, from 289 to 354: score 45.8, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++fl ++sH+LRTPL+++r+ + +l+ e +++++
AM902716_5 289 LQRQFLDDASHQLRTPLSVLRTQTAYALR----------ESDPQEV- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r r n++L l+r+
AM902716_5 325 ----------RAVLLAMQEGLDRAVRTTNQMLALARAKDA 354

AM902716_4035: domain 1 of 1, from 212 to 278: score 44.5, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+anlsHE RTPL+aIr +e++l d++l+++
AM902716_4 212 REREFAANLSHEVRTPLAAIRSDSEIMLL--------DAALPADS-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le+i ++++ + ++ + ++r +
AM902716_4 249 ----------RQRLERITANVDHIVASLESARSMARDQPR 278

AM902716_3031: domain 1 of 1, from 351 to 421: score 40.4, E = 5.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PLtaI y+ + + + + +
AM902716_3 351 TMGEMASSLAHELNQPLTAIANYSMGAVA---------LVKAGHTSP 388

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L +le++ ++aer ++i++++++ + ++
AM902716_3 389 NML-------LPALEKAASQAERAGKIISRIREFVKRSEP 421

AM902716_3945: domain 1 of 1, from 1605 to 1675: score 39.6, E = 8.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+++HE ++P++a ++ae++l++ld ++++ ++
AM902716_3 1605 TMGQLTASIAHEVNQPIAATVTNAEAALRWLD-----LQPADTREA- 1645

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +i ++a+r + +n++++l r +
AM902716_3 1646 ----------RLALGRIVKDANRAGEVLNRIRQLIRKAPP 1675

AM902716_1707: domain 1 of 1, from 238 to 297: score 36.5, E = 6.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPL+ +r+ +e+ + se+
AM902716_1 238 DRELMLAGISHDLRTPLARMRLEIEM------------SGVSEDA-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++++ ++++ i +l++++r
AM902716_1 271 -------------RQAIDEDLAQIDHSIGQLMEYARPAGT 297

AM902716_4786: domain 1 of 1, from 443 to 520: score 35.6, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y++++ + ld +a ++++ + ++
AM902716_4 443 TMGEMASALAHELNQPLAAINSYCSAASNLLD--YADRDAAAARDV- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
d+ ++ ++++++ ++er ++i ++ d+ r +
AM902716_4 487 ------DGDVHALVSKARIQSERAGQIIGRVHDFVRKADP 520


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-14 7 0|=
-13 35 3|*=
-12 165 114|======*===
-11 400 596|======================= *
-10 790 1106|============================================ *
-9 1035 1142|==========================================================*
-8 950 855|===============================================*=====
-7 664 539|=============================*=======
-6 401 310|=================*=====
-5 275 170|=========*======
-4 133 91|=====*==
-3 62 48|==*=
-2 35 25|=*
-1 23 13|*=
0 13 6|*
1 7 3|*
2 3 1|*
3 3 0|=
4 2 0|=
5 2 0|=
> 6 26 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 357.2578
P(chi-square) = 0

Total sequences searched: 5035

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: