Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for AM920689  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM920689.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM920689_4139 CDS_4632028-4630766 88.3 1.1e-25 1
AM920689_3251 CDS_3663210-3662014 71.9 7.4e-21 1
AM920689_2284 CDS_2619188-2617095 63.2 2.7e-18 1
AM920689_2027 CDS_2334709-2331356 46.3 2.5e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM920689_4139 1/1 216 283 .. 1 70 [] 88.3 1.1e-25
AM920689_3251 1/1 199 263 .. 1 70 [] 71.9 7.4e-21
AM920689_2284 1/1 491 556 .. 1 70 [] 63.2 2.7e-18
AM920689_2027 1/1 892 959 .. 1 70 [] 46.3 2.5e-13

Alignments of top-scoring domains:
AM920689_4139: domain 1 of 1, from 216 to 283: score 88.3, E = 1.1e-25
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI R+LHD +g++Ls+++l+++la+rl+ ++dp++ar ++d++
AM920689_4 216 ERERIGRDLHDLLGHTLSLVALKSDLAARLI--ERDPQAARSEIDAV 260

relarealaevRrllgdLRpaal<-*
++++r+ala+vRr+++++R a+l
AM920689_4 261 AQISRDALAQVRRAVTGIRAAGL 283

AM920689_3251: domain 1 of 1, from 199 to 263: score 71.9, E = 7.4e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD +g++L+a++l le+a +++ ++a+e+++++
AM920689_3 199 ERTRISRELHDLLGHHLTALSLNLEVAGHIT-----EGQAQEHVRQA 240

relarealaevRrllgdLRpaal<-*
++la+ l++vR+++++LR+++
AM920689_3 241 HTLAKLLLTDVREAVSQLRDSGA 263

AM920689_2284: domain 1 of 1, from 491 to 556: score 63.2, E = 2.7e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+ I+R+LHD +gQ+++a+kl +++a+ d ++dp + re l+ei
AM920689_2 491 ERRAISRDLHDDIGQAITAMKLSAHAAL---D-EADPVARREDLQEI 533

relarealaevRrllgdLRpaal<-*
la+ + + +R+l LRp++l
AM920689_2 534 VSLADSTVTKLRNLSMLLRPPQL 556

AM920689_2027: domain 1 of 1, from 892 to 959: score 46.3, E = 2.5e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD++ Q+ +++l l++a r l + d+ + r++l+
AM920689_2 892 ERERIARELHDTLLQGTQGLILRLHTASRSL--AWDD-PRRQELEKT 935

relarealaevRrllgdLR.paal<-*
ela++al e R+ + +LR++ l
AM920689_2 936 VELAERALIEGRDRVNGLRdTHSL 959


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 6 0|=
-13 35 0|===
-12 86 49|====*===
-11 167 409|============== *
-10 501 949|========================================== *
-9 697 1078|==========================================================*
-8 680 831|========================================================= *
-7 627 522|===========================================*=========
-6 525 295|========================*===================
-5 490 158|=============*===========================
-4 253 82|======*===============
-3 125 42|===*=======
-2 97 21|=*=======
-1 63 11|*=====
0 36 5|*==
1 29 2|*==
2 13 1|*=
3 9 0|=
4 8 0|=
5 8 0|=
6 3 0|=
7 1 0|=
8 3 0|=
> 9 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2610.7490
P(chi-square) = 0

Total sequences searched: 4513

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: