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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Enteritidis str. P125109  

Data for AM933172  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM933172.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM933172_2792 CDS_2995206-2997962 100.2 5.2e-28 1
AM933172_0377 CDS_430935-432230 90.2 3.5e-25 1
AM933172_1645 CDS_1749576-1752338 82.3 5.8e-23 1
AM933172_2247 CDS_2367658-2364812 80.6 1.8e-22 1
AM933172_3147 CDS_3374580-3372244 78.9 5.3e-22 1
AM933172_3628 CDS_3901108-3903843 72.8 2.8e-20 1
AM933172_2537 CDS_2708379-2706937 69.6 2.3e-19 1
AM933172_3831 CDS_4137925-4136552 67.0 1.2e-18 1
AM933172_2119 CDS_2227743-2229146 63.5 1.3e-17 1
AM933172_3937 CDS_4260640-4262037 62.5 2.4e-17 1
AM933172_0663 CDS_741768-739084 61.1 6.2e-17 1
AM933172_3779 CDS_4084117-4083068 60.3 1e-16 1
AM933172_4307 CDS_4673102-4674526 59.6 1.6e-16 1
AM933172_0951 CDS_1061492-1060128 57.5 6.4e-16 1
AM933172_3007 CDS_3229411-3230760 55.9 1.8e-15 1
AM933172_3312 CDS_3540250-3539015 54.9 3.4e-15 1
AM933172_4033 CDS_4390947-4389877 47.7 3.9e-13 1
AM933172_1568 CDS_1681619-1682920 47.4 4.5e-13 1
AM933172_2618 CDS_2818701-2817286 36.6 5.2e-10 1
AM933172_2379 CDS_2509557-2507551 35.3 1.3e-09 1
AM933172_1651 CDS_1757850-1756072 29.3 6.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM933172_2792 1/1 292 357 .. 1 87 [] 100.2 5.2e-28
AM933172_0377 1/1 203 269 .. 1 87 [] 90.2 3.5e-25
AM933172_1645 1/1 395 460 .. 1 87 [] 82.3 5.8e-23
AM933172_2247 1/1 469 534 .. 1 87 [] 80.6 1.8e-22
AM933172_3147 1/1 282 347 .. 1 87 [] 78.9 5.3e-22
AM933172_3628 1/1 444 509 .. 1 87 [] 72.8 2.8e-20
AM933172_2537 1/1 253 321 .. 1 87 [] 69.6 2.3e-19
AM933172_3831 1/1 238 300 .. 1 87 [] 67.0 1.2e-18
AM933172_2119 1/1 240 304 .. 1 87 [] 63.5 1.3e-17
AM933172_3937 1/1 246 312 .. 1 87 [] 62.5 2.4e-17
AM933172_0663 1/1 663 730 .. 1 87 [] 61.1 6.2e-17
AM933172_3779 1/1 129 186 .. 1 79 [. 60.3 1e-16
AM933172_4307 1/1 255 320 .. 1 87 [] 59.6 1.6e-16
AM933172_0951 1/1 236 302 .. 1 87 [] 57.5 6.4e-16
AM933172_3007 1/1 236 302 .. 1 87 [] 55.9 1.8e-15
AM933172_3312 1/1 194 254 .. 1 87 [] 54.9 3.4e-15
AM933172_4033 1/1 142 202 .. 1 87 [] 47.7 3.9e-13
AM933172_1568 1/1 211 271 .. 1 87 [] 47.4 4.5e-13
AM933172_2618 1/1 246 311 .. 1 87 [] 36.6 5.2e-10
AM933172_2379 1/1 447 515 .. 1 87 [] 35.3 1.3e-09
AM933172_1651 1/1 357 426 .. 1 87 [] 29.3 6.3e-08

Alignments of top-scoring domains:
AM933172_2792: domain 1 of 1, from 292 to 357: score 100.2, E = 5.2e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
AM933172_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
AM933172_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

AM933172_0377: domain 1 of 1, from 203 to 269: score 90.2, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
AM933172_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
AM933172_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

AM933172_1645: domain 1 of 1, from 395 to 460: score 82.3, E = 5.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
AM933172_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
AM933172_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

AM933172_2247: domain 1 of 1, from 469 to 534: score 80.6, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
AM933172_2 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
AM933172_2 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

AM933172_3147: domain 1 of 1, from 282 to 347: score 78.9, E = 5.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
AM933172_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
AM933172_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

AM933172_3628: domain 1 of 1, from 444 to 509: score 72.8, E = 2.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
AM933172_3 444 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
AM933172_3 480 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 509

AM933172_2537: domain 1 of 1, from 253 to 321: score 69.6, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
AM933172_2 253 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
AM933172_2 292 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 321

AM933172_3831: domain 1 of 1, from 238 to 300: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
AM933172_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
AM933172_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

AM933172_2119: domain 1 of 1, from 240 to 304: score 63.5, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
AM933172_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
AM933172_2 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

AM933172_3937: domain 1 of 1, from 246 to 312: score 62.5, E = 2.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
AM933172_3 246 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
AM933172_3 283 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 312

AM933172_0663: domain 1 of 1, from 663 to 730: score 61.1, E = 6.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
AM933172_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
AM933172_0 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

AM933172_3779: domain 1 of 1, from 129 to 186: score 60.3, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
AM933172_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
AM933172_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

AM933172_4307: domain 1 of 1, from 255 to 320: score 59.6, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +
AM933172_4 255 DIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
AM933172_4 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

AM933172_0951: domain 1 of 1, from 236 to 302: score 57.5, E = 6.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
AM933172_0 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
AM933172_0 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

AM933172_3007: domain 1 of 1, from 236 to 302: score 55.9, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
AM933172_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
AM933172_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

AM933172_3312: domain 1 of 1, from 194 to 254: score 54.9, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
AM933172_3 194 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
AM933172_3 225 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 254

AM933172_4033: domain 1 of 1, from 142 to 202: score 47.7, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
AM933172_4 142 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
AM933172_4 173 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 202

AM933172_1568: domain 1 of 1, from 211 to 271: score 47.4, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
AM933172_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
AM933172_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

AM933172_2618: domain 1 of 1, from 246 to 311: score 36.6, E = 5.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
AM933172_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
AM933172_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

AM933172_2379: domain 1 of 1, from 447 to 515: score 35.3, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
AM933172_2 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
AM933172_2 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

AM933172_1651: domain 1 of 1, from 357 to 426: score 29.3, E = 6.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ l +l +++e++ l
AM933172_1 357 VLGEMTSGFAHELNQPLSAIRHYAQGGLIRL-------RAADEQHPL 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
AM933172_1 397 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 426


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 14 0|=
-13 57 3|*====
-12 196 96|======*=======
-11 439 498|================================ *
-10 713 924|=================================================== *
-9 818 955|==========================================================*
-8 722 715|===================================================*
-7 503 450|================================*===
-6 306 259|==================*===
-5 201 142|==========*====
-4 98 76|=====*=
-3 36 40|==*
-2 27 21|=*
-1 23 11|*=
0 14 5|*
1 6 3|*
2 6 1|*
3 1 0|=
4 1 0|=
> 5 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 251.0260
P(chi-square) = 0

Total sequences searched: 4318

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: