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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Enteritidis str. P125109  

Data for AM933172  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AM933172.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM933172_1261 CDS_1352367-1350571 74.3 1.4e-21 1
AM933172_2454 CDS_2589242-2590942 72.9 3.5e-21 1
AM933172_3591 CDS_3865132-3863630 65.1 7.4e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM933172_1261 1/1 390 458 .. 1 70 [] 74.3 1.4e-21
AM933172_2454 1/1 361 428 .. 1 70 [] 72.9 3.5e-21
AM933172_3591 1/1 304 370 .. 1 70 [] 65.1 7.4e-19

Alignments of top-scoring domains:
AM933172_1261: domain 1 of 1, from 390 to 458: score 74.3, E = 1.4e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d pe re l +i
AM933172_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DVLPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
AM933172_1 435 RNELNCSWAQLRELLTTFRlQLTE 458

AM933172_2454: domain 1 of 1, from 361 to 428: score 72.9, E = 3.5e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r++ ++d++ a+ ++
AM933172_2 361 ERATIARELHDSLAQVLSYLRIQLTLLKRAI--PEDNAGAQSIMADF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
AM933172_2 406 SRALNDAYRQLRELLTTFRLTLQ 428

AM933172_3591: domain 1 of 1, from 304 to 370: score 65.1, E = 7.4e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
AM933172_3 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNGGVKQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
AM933172_3 348 EQLSLGVYDAVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 18 0|==
-13 101 0|========
-12 158 46|===*========
-11 264 385|=================== *
-10 702 894|=================================================== *
-9 800 1015|==========================================================*
-8 610 782|============================================ *
-7 511 492|===================================*=
-6 397 278|===================*=========
-5 304 149|==========*===========
-4 134 77|=====*====
-3 86 40|==*====
-2 50 20|=*==
-1 30 10|*==
0 17 5|*=
1 7 2|*
2 5 1|*
3 4 0|=
4 1 0|=
5 3 0|=
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 834.7780
P(chi-square) = 0

Total sequences searched: 4318

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: