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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91  

Data for AM933173  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM933173.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM933173_2765 CDS_2985645-2988401 100.2 5.1e-28 1
AM933173_0399 CDS_449355-450650 90.2 3.5e-25 1
AM933173_2220 CDS_2358429-2355682 80.6 1.8e-22 1
AM933173_3106 CDS_3351817-3349481 78.9 5.3e-22 1
AM933173_1673 CDS_1789400-1792162 78.0 1e-21 1
AM933173_2509 CDS_2699191-2697749 69.6 2.3e-19 1
AM933173_3246 CDS_3516676-3518049 67.0 1.2e-18 1
AM933173_2092 CDS_2218750-2220153 63.5 1.3e-17 1
AM933173_3314 CDS_3596698-3595307 62.5 2.3e-17 1
AM933173_0686 CDS_760134-757432 61.1 6.1e-17 1
AM933173_3299 CDS_3571377-3572426 60.3 1e-16 1
AM933173_4263 CDS_4646114-4647538 59.6 1.6e-16 1
AM933173_0963 CDS_1070781-1069417 57.5 6.3e-16 1
AM933173_2966 CDS_3206789-3208138 55.9 1.8e-15 1
AM933173_3800 CDS_4158122-4159357 54.9 3.4e-15 1
AM933173_3993 CDS_4368846-4367776 47.7 3.8e-13 1
AM933173_1596 CDS_1721537-1722838 47.4 4.5e-13 1
AM933173_2590 CDS_2809553-2808138 36.6 5.2e-10 1
AM933173_2351 CDS_2500456-2498450 35.3 1.2e-09 1
AM933173_1679 CDS_1797675-1795897 28.6 9.6e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM933173_2765 1/1 292 357 .. 1 87 [] 100.2 5.1e-28
AM933173_0399 1/1 203 269 .. 1 87 [] 90.2 3.5e-25
AM933173_2220 1/1 436 501 .. 1 87 [] 80.6 1.8e-22
AM933173_3106 1/1 282 347 .. 1 87 [] 78.9 5.3e-22
AM933173_1673 1/1 395 460 .. 1 87 [] 78.0 1e-21
AM933173_2509 1/1 253 321 .. 1 87 [] 69.6 2.3e-19
AM933173_3246 1/1 238 300 .. 1 87 [] 67.0 1.2e-18
AM933173_2092 1/1 240 304 .. 1 87 [] 63.5 1.3e-17
AM933173_3314 1/1 244 310 .. 1 87 [] 62.5 2.3e-17
AM933173_0686 1/1 663 730 .. 1 87 [] 61.1 6.1e-17
AM933173_3299 1/1 129 186 .. 1 79 [. 60.3 1e-16
AM933173_4263 1/1 255 320 .. 1 87 [] 59.6 1.6e-16
AM933173_0963 1/1 236 302 .. 1 87 [] 57.5 6.3e-16
AM933173_2966 1/1 236 302 .. 1 87 [] 55.9 1.8e-15
AM933173_3800 1/1 194 254 .. 1 87 [] 54.9 3.4e-15
AM933173_3993 1/1 142 202 .. 1 87 [] 47.7 3.8e-13
AM933173_1596 1/1 211 271 .. 1 87 [] 47.4 4.5e-13
AM933173_2590 1/1 246 311 .. 1 87 [] 36.6 5.2e-10
AM933173_2351 1/1 447 515 .. 1 87 [] 35.3 1.2e-09
AM933173_1679 1/1 357 426 .. 1 87 [] 28.6 9.6e-08

Alignments of top-scoring domains:
AM933173_2765: domain 1 of 1, from 292 to 357: score 100.2, E = 5.1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
AM933173_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
AM933173_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

AM933173_0399: domain 1 of 1, from 203 to 269: score 90.2, E = 3.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
AM933173_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
AM933173_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

AM933173_2220: domain 1 of 1, from 436 to 501: score 80.6, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
AM933173_2 436 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
AM933173_2 472 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 501

AM933173_3106: domain 1 of 1, from 282 to 347: score 78.9, E = 5.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
AM933173_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
AM933173_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

AM933173_1673: domain 1 of 1, from 395 to 460: score 78.0, E = 1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
AM933173_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+s ie+g
AM933173_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSCIESG 460

AM933173_2509: domain 1 of 1, from 253 to 321: score 69.6, E = 2.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
AM933173_2 253 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
AM933173_2 292 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 321

AM933173_3246: domain 1 of 1, from 238 to 300: score 67.0, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
AM933173_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
AM933173_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

AM933173_2092: domain 1 of 1, from 240 to 304: score 63.5, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
AM933173_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
AM933173_2 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

AM933173_3314: domain 1 of 1, from 244 to 310: score 62.5, E = 2.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
AM933173_3 244 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
AM933173_3 281 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 310

AM933173_0686: domain 1 of 1, from 663 to 730: score 61.1, E = 6.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
AM933173_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
AM933173_0 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

AM933173_3299: domain 1 of 1, from 129 to 186: score 60.3, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
AM933173_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
AM933173_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

AM933173_4263: domain 1 of 1, from 255 to 320: score 59.6, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +
AM933173_4 255 DIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
AM933173_4 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

AM933173_0963: domain 1 of 1, from 236 to 302: score 57.5, E = 6.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
AM933173_0 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
AM933173_0 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

AM933173_2966: domain 1 of 1, from 236 to 302: score 55.9, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
AM933173_2 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
AM933173_2 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

AM933173_3800: domain 1 of 1, from 194 to 254: score 54.9, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
AM933173_3 194 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
AM933173_3 225 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 254

AM933173_3993: domain 1 of 1, from 142 to 202: score 47.7, E = 3.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
AM933173_3 142 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
AM933173_3 173 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 202

AM933173_1596: domain 1 of 1, from 211 to 271: score 47.4, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
AM933173_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
AM933173_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

AM933173_2590: domain 1 of 1, from 246 to 311: score 36.6, E = 5.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
AM933173_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
AM933173_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

AM933173_2351: domain 1 of 1, from 447 to 515: score 35.3, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
AM933173_2 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
AM933173_2 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

AM933173_1679: domain 1 of 1, from 357 to 426: score 28.6, E = 9.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
AM933173_1 357 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++ +r + +++l+ +g
AM933173_1 397 ----------LPALEQIDQQEQRGADTLRNLRHWVSQAQG 426


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 11 0|=
-13 55 2|*===
-12 181 90|======*======
-11 421 470|=============================== *
-10 674 871|================================================= *
-9 782 900|======================================================== *
-8 678 674|================================================*
-7 471 424|==============================*===
-6 287 244|=================*===
-5 180 134|=========*===
-4 89 71|=====*=
-3 37 37|==*
-2 27 19|=*
-1 21 10|*=
0 14 5|*
1 6 2|*
2 5 1|*
3 1 0|=
4 1 0|=
> 5 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 214.8916
P(chi-square) = 5.144e-309

Total sequences searched: 4274

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: