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Classification of phyla is from NCBI page
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2 accessions found for Proteus mirabilis HI4320  

Data for AM942759  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM942759.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM942759_0052 CDS_79657-80949 92.8 5.5e-26 1
AM942759_1714 CDS_1851447-1848619 87.8 1.4e-24 1
AM942759_3644 CDS_4018571-4020907 75.9 3.3e-21 1
AM942759_1855 CDS_2017684-2016236 68.5 4e-19 1
AM942759_3168 CDS_3513741-3512374 67.9 6e-19 1
AM942759_1210 CDS_1302164-1299462 62.4 2.2e-17 1
AM942759_2859 CDS_3161950-3162996 59.9 1.1e-16 1
AM942759_1571 CDS_1695686-1697062 55.8 1.6e-15 1
AM942759_2868 CDS_3172721-3174061 51.0 3.8e-14 2
AM942759_1680 CDS_1814082-1815485 48.4 2.1e-13 1
AM942759_1667 CDS_1800265-1802028 28.7 8e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM942759_0052 1/1 203 269 .. 1 87 [] 92.8 5.5e-26
AM942759_1714 1/1 469 534 .. 1 87 [] 87.8 1.4e-24
AM942759_3644 1/1 282 347 .. 1 87 [] 75.9 3.3e-21
AM942759_1855 1/1 256 324 .. 1 87 [] 68.5 4e-19
AM942759_3168 1/1 238 300 .. 1 87 [] 67.9 6e-19
AM942759_1210 1/1 669 736 .. 1 87 [] 62.4 2.2e-17
AM942759_2859 1/1 129 186 .. 1 79 [. 59.9 1.1e-16
AM942759_1571 1/1 232 296 .. 1 87 [] 55.8 1.6e-15
AM942759_2868 2/2 233 293 .. 1 87 [] 50.0 7e-14
AM942759_1680 1/1 240 305 .. 1 87 [] 48.4 2.1e-13
AM942759_1667 1/1 363 424 .. 1 79 [. 28.7 8e-08

Alignments of top-scoring domains:
AM942759_0052: domain 1 of 1, from 203 to 269: score 92.8, E = 5.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I+gy+e+++e+ t+ ++ +
AM942759_0 203 SRRDFFANVSHELRTPLTVIQGYLEMMEEN--------TAENPAE-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++t++++a+r++ L+++lL+lsrie+
AM942759_0 240 ----------HKVIKTMQEQAKRMDLLVQQLLQLSRIESA 269

AM942759_1714: domain 1 of 1, from 469 to 534: score 87.8, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL +I+g++elL+ +++ee+
AM942759_1 469 AKSMFLATVSHELRTPLYGIIGNLELLQS---------LTQNEET-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ ll++i+d+Ld+s+ie+
AM942759_1 505 ----------ARLLKTMDNSSSLLLKIISDILDFSKIESK 534

AM942759_3644: domain 1 of 1, from 282 to 347: score 75.9, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tels+eq
AM942759_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELSPEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti+ +a l ++ nd+ ++ +ie
AM942759_3 318 ----------LNYLKTIHVSAITLGNIFNDVIEMDKIERR 347

AM942759_1855: domain 1 of 1, from 256 to 324: score 68.5, E = 4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
AM942759_1 256 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTLDQ-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l+ Li++lLd+ r ++
AM942759_1 295 ----------KEVVAILDNSSKQLQLLIEQLLDYNRKLSE 324

AM942759_3168: domain 1 of 1, from 238 to 300: score 67.9, E = 6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ lL++ +++
AM942759_3 238 AQQRLISDISHELRTPLTRLQLASALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ e++rl+ +indlL lsr +
AM942759_3 274 -------------LERIETETQRLDGMINDLLVLSRNQYK 300

AM942759_1210: domain 1 of 1, from 669 to 736: score 62.4, E = 2.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+L+TPLt++ g +e+Ll +l ++ ++ +
AM942759_1 669 LRNALLAALSHDLKTPLTVLFGQSEILLLDL-------SAEGSAH-- 706

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ i++++ +rL+n+lLd++ri++g
AM942759_1 707 ----------TEQVSQIRQQILTTSRLVNNLLDMARIQSG 736

AM942759_2859: domain 1 of 1, from 129 to 186: score 59.9, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL ++rg+a+lL + l+++ +
AM942759_2 129 AARELVRGLAHEIKNPLGGLRGAAQLLAK----------SLPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
AM942759_2 165 ----------TEYTQVIIEQADRLRALVDRLL 186

AM942759_1571: domain 1 of 1, from 232 to 296: score 55.8, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a++sHELRTPL+ ++g +e+L++++ + ++e+
AM942759_1 232 IRRDYMADISHELRTPLAILKGELEALQDGV-------RKPTAET-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l e+ l +L+ndl +ls + g
AM942759_1 270 -------------LNSLLFEVTNLTKLVNDLHQLSLSDRG 296

AM942759_2868: domain 2 of 2, from 233 to 293: score 50.0, E = 7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a++sH+LRTPLt Ir+++e++ e+
AM942759_2 233 DRTLVMAGVSHDLRTPLTRIRLATEMMSP--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i +++e ++++i ++Ld+ r + +
AM942759_2 264 ----------SYLADSINKDIEDCDAIIGQFLDYMRTGKE 293

AM942759_1680: domain 1 of 1, from 240 to 305: score 48.4, E = 2.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTP++a+++ +++L ++r
AM942759_1 240 REKQFMADAAHELRTPIAAVIAQLHILSL----------VDEKQER- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e ++++++r +L +l dl+r+e
AM942759_1 276 ----------EEIIEDMKQSLDRAAALSHQLIDLARLECD 305

AM942759_1667: domain 1 of 1, from 363 to 424: score 28.7, E = 8e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aI+ ya+ +l+k ++++ +
AM942759_1 363 ILGEMASGFAHELNQPLSAIKSYAQGSAIRLEK-----ENKNHPL-- 402

peLRledpeyreyletilreaerllrLindlL<-*
+l+ i+++a+r ++i++l+
AM942759_1 403 ----------LPALRQIDHQAQRGADIIRNLR 424


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 15 0|==
-13 49 2|*====
-12 203 82|======*==========
-11 414 427|===================================*
-10 617 793|==================================================== *
-9 672 819|======================================================== *
-8 595 613|================================================== *
-7 406 386|================================*=
-6 255 222|==================*===
-5 164 122|==========*===
-4 86 65|=====*==
-3 39 34|==*=
-2 35 18|=*=
-1 18 9|*=
0 10 4|*
1 7 2|*
2 1 1|*
3 4 0|=
> 4 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 293.6876
P(chi-square) = 0

Total sequences searched: 3685

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: