Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Wolbachia endosymbiont of Culex quinquefasciatus Pel  

Data for AM999887  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AM999887.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AM999887_0783 CDS_859964-861391 77.3 5e-22 1
AM999887_0965 CDS_1033340-1035820 42.6 3.4e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AM999887_0783 1/1 239 308 .. 1 87 [] 77.3 5e-22
AM999887_0965 1/1 438 504 .. 1 87 [] 42.6 3.4e-12

Alignments of top-scoring domains:
AM999887_0783: domain 1 of 1, from 239 to 308: score 77.3, E = 5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +f+a++ HELRTPL+aI+g+a+l+++ ++l++ ++
AM999887_0 239 NKIKFFASVTHELRTPLNAIIGFAKLIKN---------ETLGSVDHS 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +ey++ i++++ +ll+Lind+Ld+s++e+
AM999887_0 277 KY--------KEYVDDIYNAGTHLLALINDVLDFSKAESS 308

AM999887_0965: domain 1 of 1, from 438 to 504: score 42.6, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g+++lLl + +s++
AM999887_0 438 AIGQLAGGIAHDFNNILTGIIGFCDLLLL--------QHSASDPS-- 474

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r ++L+++lL +sr ++
AM999887_0 475 ----------FGDIIQIQQNAKRGSNLVRQLLAFSRRQTL 504


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 6 0|==
-13 34 0|=========
-12 51 29|=======*=====
-11 202 151|=====================================*=============
-10 230 280|==========================================================*
-9 229 289|==========================================================*
-8 200 216|================================================== *
-7 116 136|============================= *
-6 91 78|===================*===
-5 41 43|==========*
-4 31 23|=====*==
-3 16 12|==*=
-2 9 6|=*=
-1 8 3|*=
0 5 1|*=
1 2 0|=
2 1 0|=
3 0 0|
4 0 0|
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 66.6578
P(chi-square) = 1.951e-10

Total sequences searched: 1385

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: