Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

5 accessions found for Synechocystis sp. PCC 6803  

Data for AP004310  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP004310.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP004310_0061 CDS_64831-61202 98.4 4.9e-29 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP004310_0061 1/1 507 572 .. 1 87 [] 98.4 4.9e-29

Alignments of top-scoring domains:
AP004310_0061: domain 1 of 1, from 507 to 572: score 98.4, E = 4.9e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP++a++g++ lLl+ t+l+ +q
AP004310_0 507 AKSDFLATMSHEIRTPMNAVIGMTGLLLD---------THLNTQQ-- 542

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++eti++++e ll+Lind+Ld+s+ie+g
AP004310_0 543 ----------QQFTETIRSSGEALLSLINDILDFSKIESG 572


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 17 3|==*==============
-11 17 15|==============*==
-10 21 29|===================== *
-9 29 29|============================*
-8 20 22|==================== *
-7 5 14|===== *
-6 7 8|=======*
-5 4 4|===*
-4 5 2|=*===
-3 0 1|*
-2 1 0|=
> -1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 8.7072
P(chi-square) = 0.1213

Total sequences searched: 132

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: