Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

3 accessions found for Corynebacterium efficiens YS-314  

Data for AP005226  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AP005226.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP005226_0006 CDS_6522-5245 77.0 2.1e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP005226_0006 1/1 195 266 .. 1 70 [] 77.0 2.1e-24

Alignments of top-scoring domains:
AP005226_0006: domain 1 of 1, from 195 to 266: score 77.0, E = 2.1e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER IARE+HD++++sL++i++q+++ ++ + p +++ e++e
AP005226_0 195 ERVQIAREIHDVLAHSLTLINIQASAGIMVS--RHGPTgtdaEIEEI 239

ldeirelarealaevRrllgdLRpaal<-*
l++i+e+++ +l+evR+++ +LR +
AP005226_0 240 LQRIQETSSSSLSEVRAIVKALRSDLP 266


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 1 0|=
-11 3 3|==*
-10 8 8|=======*
-9 4 9|==== *
-8 3 7|=== *
-7 8 4|===*====
-6 7 2|=*=====
-5 3 1|*==
-4 1 0|=
-3 0 0|
> -2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 0.0593
P(chi-square) = 0

Total sequences searched: 41

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: