Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

5 accessions found for Synechocystis sp. PCC 6803  

Data for AP006585  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP006585.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP006585_0042 CDS_36066-37418 70.6 3.1e-21 1
AP006585_0002 CDS_465-3053 38.0 5.2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP006585_0042 1/1 218 284 .. 1 87 [] 70.6 3.1e-21
AP006585_0002 1/1 486 551 .. 1 87 [] 38.0 5.2e-12

Alignments of top-scoring domains:
AP006585_0042: domain 1 of 1, from 218 to 284: score 70.6, E = 3.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP+taI++++e+ l+ +e ++e++
AP006585_0 218 QIQQFTADIAHELRTPITAIQATLETTLN---------AEPNAEET- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t++r+ rl++Li dlL lsr++
AP006585_0 255 ----------HSTLQTLKRQNYRLSHLIHDLLLLSRMDLT 284

AP006585_0002: domain 1 of 1, from 486 to 551: score 38.0, E = 5.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ Lt+I+g+ae+L e +++
AP006585_0 486 AVGHLTGGVAHDFNNLLTVILGNAEMLAE---------LVTDPDL-- 521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e l++a+r +L + lL ++r +
AP006585_0 522 ----------QSMAEMTLSAAKRGAELTRHLLAFARRQPL 551


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 11 2|=*=========
-11 8 13|======== *
-10 15 24|=============== *
-9 17 24|================= *
-8 16 18|================ *
-7 19 11|==========*========
-6 9 6|=====*===
-5 3 3|==*
-4 1 1|*
-3 2 1|*=
-2 2 0|==
> -1 4 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 13.5167
P(chi-square) = 0.01899

Total sequences searched: 110

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: