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Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

2 accessions found for Bacteroides fragilis YCH46  

Data for AP006841  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP006841.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP006841_4338 CDS_4952198-4950525 96.1 7.5e-27 1
AP006841_3321 CDS_3795861-3798131 95.2 1.4e-26 1
AP006841_1173 CDS_1408848-1410761 92.1 1e-25 1
AP006841_0538 CDS_614659-615894 88.5 1.1e-24 1
AP006841_1993 CDS_2340865-2338166 88.2 1.3e-24 1
AP006841_2706 CDS_3106513-3109674 87.5 2.1e-24 1
AP006841_1514 CDS_1759458-1762070 87.2 2.6e-24 1
AP006841_0861 CDS_1020323-1023112 86.9 3e-24 1
AP006841_2627 CDS_3020147-3017079 85.1 1e-23 1
AP006841_1805 CDS_2127576-2129495 84.9 1.1e-23 1
AP006841_1052 CDS_1263260-1265161 83.3 3.3e-23 1
AP006841_2501 CDS_2875654-2873216 82.5 5.6e-23 1
AP006841_3373 CDS_3866948-3865068 80.3 2.4e-22 1
AP006841_4455 CDS_5125722-5124154 78.5 7.6e-22 1
AP006841_1295 CDS_1530707-1533085 78.5 7.6e-22 1
AP006841_0140 CDS_147508-146009 75.0 7.4e-21 1
AP006841_0456 CDS_539207-537192 74.6 9.6e-21 1
AP006841_0741 CDS_874210-875379 73.7 1.7e-20 1
AP006841_0583 CDS_678588-680027 72.9 2.9e-20 1
AP006841_3211 CDS_3644956-3646911 70.9 1.1e-19 1
AP006841_3210 CDS_3643109-3644959 68.4 5.5e-19 1
AP006841_2112 CDS_2463274-2461739 68.4 5.6e-19 1
AP006841_1576 CDS_1831248-1829467 63.6 1.2e-17 1
AP006841_4479 CDS_5159500-5155511 60.5 9.6e-17 1
AP006841_0388 CDS_454934-456583 60.1 1.2e-16 1
AP006841_0328 CDS_361696-365685 58.5 3.4e-16 1
AP006841_4524 CDS_5217043-5214287 58.2 4.2e-16 1
AP006841_3858 CDS_4405795-4404236 58.2 4.2e-16 1
AP006841_0210 CDS_227418-228785 57.6 6.1e-16 1
AP006841_2199 CDS_2570029-2568020 57.2 8.3e-16 1
AP006841_4103 CDS_4709498-4707198 56.0 1.7e-15 1
AP006841_2184 CDS_2552638-2553975 55.5 2.5e-15 1
AP006841_0293 CDS_322159-323253 54.8 4e-15 1
AP006841_0886 CDS_1053784-1057770 53.3 1e-14 1
AP006841_2197 CDS_2565582-2564140 53.1 1.2e-14 1
AP006841_3334 CDS_3812547-3809824 47.6 4.2e-13 1
AP006841_2738 CDS_3149838-3151136 44.0 4.4e-12 1
AP006841_3485 CDS_3987132-3983065 40.4 4.7e-11 1
AP006841_0294 CDS_323250-325193 35.3 1.3e-09 1
AP006841_4228 CDS_4830676-4826753 34.0 3.1e-09 1
AP006841_4370 CDS_5002446-5006474 28.6 1e-07 1
AP006841_2962 CDS_3366541-3365705 28.2 1.4e-07 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP006841_4338 1/1 190 255 .. 1 87 [] 96.1 7.5e-27
AP006841_3321 1/1 530 599 .. 1 87 [] 95.2 1.4e-26
AP006841_1173 1/1 283 348 .. 1 87 [] 92.1 1e-25
AP006841_0538 1/1 191 256 .. 1 87 [] 88.5 1.1e-24
AP006841_1993 1/1 511 576 .. 1 87 [] 88.2 1.3e-24
AP006841_2706 1/1 691 756 .. 1 87 [] 87.5 2.1e-24
AP006841_1514 1/1 648 715 .. 1 87 [] 87.2 2.6e-24
AP006841_0861 1/1 704 769 .. 1 87 [] 86.9 3e-24
AP006841_2627 1/1 649 714 .. 1 87 [] 85.1 1e-23
AP006841_1805 1/1 420 486 .. 1 87 [] 84.9 1.1e-23
AP006841_1052 1/1 410 475 .. 1 87 [] 83.3 3.3e-23
AP006841_2501 1/1 588 653 .. 1 87 [] 82.5 5.6e-23
AP006841_3373 1/1 397 462 .. 1 87 [] 80.3 2.4e-22
AP006841_4455 1/1 305 370 .. 1 87 [] 78.5 7.6e-22
AP006841_1295 1/1 560 629 .. 1 87 [] 78.5 7.6e-22
AP006841_0140 1/1 299 364 .. 1 87 [] 75.0 7.4e-21
AP006841_0456 1/1 447 515 .. 1 87 [] 74.6 9.6e-21
AP006841_0741 1/1 166 231 .. 1 87 [] 73.7 1.7e-20
AP006841_0583 1/1 257 325 .. 1 87 [] 72.9 2.9e-20
AP006841_3211 1/1 442 509 .. 1 87 [] 70.9 1.1e-19
AP006841_3210 1/1 389 455 .. 1 87 [] 68.4 5.5e-19
AP006841_2112 1/1 286 354 .. 1 87 [] 68.4 5.6e-19
AP006841_1576 1/1 368 435 .. 1 87 [] 63.6 1.2e-17
AP006841_4479 1/1 830 896 .. 1 87 [] 60.5 9.6e-17
AP006841_0388 1/1 19 85 .. 1 87 [] 60.1 1.2e-16
AP006841_0328 1/1 828 893 .. 1 87 [] 58.5 3.4e-16
AP006841_4524 1/1 404 470 .. 1 87 [] 58.2 4.2e-16
AP006841_3858 1/1 289 357 .. 1 87 [] 58.2 4.2e-16
AP006841_0210 1/1 232 298 .. 1 87 [] 57.6 6.1e-16
AP006841_2199 1/1 450 516 .. 1 87 [] 57.2 8.3e-16
AP006841_4103 1/1 271 336 .. 1 87 [] 56.0 1.7e-15
AP006841_2184 1/1 233 299 .. 1 87 [] 55.5 2.5e-15
AP006841_0293 1/1 141 207 .. 1 87 [] 54.8 4e-15
AP006841_0886 1/1 813 879 .. 1 87 [] 53.3 1e-14
AP006841_2197 1/1 257 325 .. 1 87 [] 53.1 1.2e-14
AP006841_3334 1/1 396 462 .. 1 87 [] 47.6 4.2e-13
AP006841_2738 1/1 215 281 .. 1 87 [] 44.0 4.4e-12
AP006841_3485 1/1 828 894 .. 1 87 [] 40.4 4.7e-11
AP006841_0294 1/1 443 510 .. 1 87 [] 35.3 1.3e-09
AP006841_4228 1/1 800 869 .. 1 87 [] 34.0 3.1e-09
AP006841_4370 1/1 823 888 .. 1 87 [] 28.6 1e-07

Alignments of top-scoring domains:
AP006841_4338: domain 1 of 1, from 190 to 255: score 96.1, E = 7.5e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTPL+aI g++elL + ++ ee+
AP006841_4 190 SKSAFLANMSHEIRTPLNAIVGFSELLAA---------ANTEEEK-- 225

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle+++ +e ll+L+nd+Ldls+ieag
AP006841_4 226 ----------QKYLEILHTNSELLLQLVNDILDLSKIEAG 255

AP006841_3321: domain 1 of 1, from 530 to 599: score 95.2, E = 1.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ flan+sHE+RTPL+aI g++ lL + dt+ ++e++
AP006841_3 530 LKESFLANISHEIRTPLNAIVGFSTLLAS------PDDTDITPEEK- 569

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti r +e ll+Lind+L+lsrie+g
AP006841_3 570 ----------EQYIDTINRNSELLLKLINDILELSRIESG 599

AP006841_1173: domain 1 of 1, from 283 to 348: score 92.1, E = 1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTPL+aI g++e++ te e+
AP006841_1 283 MKSVFLANMSHEIRTPLNAIVGFSEIIAL---------TEDEKEK-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl +i++ ++ ll+Lind+Ldlsrie+g
AP006841_1 319 ----------EEYLGIIQQNSNLLLQLINDILDLSRIESG 348

AP006841_0538: domain 1 of 1, from 191 to 256: score 88.5, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+an+sHE+RTPL+aI g++ lL ++ + e+
AP006841_0 191 LKSAFIANMSHEIRTPLNAIVGFSGLLAS---------ADDDTEK-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+++ + +rll+++ d+Ldls+ie+g
AP006841_0 227 ----------KMYLDIVAENNDRLLQIVTDVLDLSKIESG 256

AP006841_1993: domain 1 of 1, from 511 to 576: score 88.2, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g++ ++ e ++e+r
AP006841_1 511 LKSAFLANMSHEIRTPLNAIVGFSRIISE----------SDNAEER- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey e+++ erll+Lin++Ldls+ie+g
AP006841_1 547 ----------REYYEIVDANNERLLQLINEILDLSKIESG 576

AP006841_2706: domain 1 of 1, from 691 to 756: score 87.5, E = 2.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g++ +L te ee+
AP006841_2 691 LKSAFLANMSHEIRTPLNAIVGFSGILAS---------TEEEEEK-- 726

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i++ ll+Li+d+Ldls+ieag
AP006841_2 727 ----------QEYVSIIENNNALLLQLISDILDLSKIEAG 756

AP006841_1514: domain 1 of 1, from 648 to 715: score 87.2, E = 2.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g+++lL + + +ee++
AP006841_1 648 LKSAFLANMSHEIRTPLNAIVGFSDLLSD--------TSGFTEEEV- 685

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++eti + ll+Lind+Ldlsrie+g
AP006841_1 686 ----------KLFIETINKNCGLLLALINDILDLSRIESG 715

AP006841_0861: domain 1 of 1, from 704 to 769: score 86.9, E = 3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g++ lL + + + e+r
AP006841_0 704 LKSAFLANMSHEIRTPLNAIVGFSGLLVD----------TEDMEER- 739

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++++++ + ll+Li+d+Ldls+ieag
AP006841_0 740 ----------CEYIKIVQENNDLLLQLISDILDLSKIEAG 769

AP006841_2627: domain 1 of 1, from 649 to 714: score 85.1, E = 1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g+++lL + +e ++
AP006841_2 649 LKSAFLANMSHEIRTPLNAIVGFSDLLMN---------SEEQGDK-- 684

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey ++i e ll+Lind+Ldls++e+g
AP006841_2 685 ----------EEYMQIINTNNELLLKLINDILDLSKLESG 714

AP006841_1805: domain 1 of 1, from 420 to 486: score 84.9, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+s E+RTPL+aI g++++L + see++
AP006841_1 420 LKSAFLANMSYEIRTPLNAIVGFSDVLAS---------GGSSEEDQ- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+++i++ ++ llrLind+Ldlsr+ea+
AP006841_1 457 ----------RNYFRIIQSNSDLLLRLINDILDLSRLEAN 486

AP006841_1052: domain 1 of 1, from 410 to 475: score 83.3, E = 3.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g++ lL + + e++
AP006841_1 410 LKSAFLANMSHEIRTPLNAIVGFSNLLSM----------VEDKEEM- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey +i+ +e ll+Lind+Ld+s+ie+g
AP006841_1 446 ----------LEYAGIIETNTELLLQLINDILDMSKIESG 475

AP006841_2501: domain 1 of 1, from 588 to 653: score 82.5, E = 5.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g+++lL + + ++eq
AP006841_2 588 LKSAFLANISHEIRTPLNAIVGFSDLLMT---------VDDPAEQ-- 623

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +ti++ ll+L +d+ dls+i+ag
AP006841_2 624 ----------EEFRRTIQKNNTLLLQLFSDIIDLSKIDAG 653

AP006841_3373: domain 1 of 1, from 397 to 462: score 80.3, E = 2.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI+g+++l+ + + e++
AP006841_3 397 LKSAFLANMSHEIRTPLNAIIGFSDLICQ----------TDDVEEK- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++++ + e ll+Li+d+Ldls+ieag
AP006841_3 433 ----------EEYIRIVTSNNELLLQLIDDILDLSKIEAG 462

AP006841_4455: domain 1 of 1, from 305 to 370: score 78.5, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks flan+sHE+RTPL+aI g+++l+ e ++ e+
AP006841_4 305 MKSSFLANMSHEIRTPLNAIVGFSKLIIE---------ADNECEK-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y +++++ + ll+L nd+Ldls +eag
AP006841_4 341 ----------RQYADIVEHNSTVLLNLFNDILDLSALEAG 370

AP006841_1295: domain 1 of 1, from 560 to 629: score 78.5, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl n+sHE+RTPL+aI g++ +Ll e+ ++e +++++
AP006841_1 560 LKQSFLNNMSHEIRTPLNAIVGFTNVLLGEG------SEEIDPDEK- 599

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+i + e ll+Lind+L++sr+++g
AP006841_1 600 ----------ASMLEIINHNNELLLKLINDVLEISRLDSG 629

AP006841_0140: domain 1 of 1, from 299 to 364: score 75.0, E = 7.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + ++ HELRTPLtaI gya l+++ + + ++
AP006841_0 299 SRKKAVHTITHELRTPLTAITGYAGLIRK---------EQCEDKS-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ il++++r+++++n lLd+ r+++g
AP006841_0 335 ----------GQYIQNILQSSDRMRDMLNTLLDFFRLDNG 364

AP006841_0456: domain 1 of 1, from 447 to 515: score 74.6, E = 9.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+ ++sHE+RTPL++I g++++L +++ +e ++e
AP006841_0 447 MKTTFIQSMSHEIRTPLNSIVGFSQVLSNYFK------EEDNDEI-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++i+ ++ llrLind+Ld+s +++
AP006841_0 486 ----------REFASIIEISSSNLLRLINDVLDISYLDQS 515

AP006841_0741: domain 1 of 1, from 166 to 231: score 73.7, E = 1.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks ++an+ HE+RTPL+aI g+a+lL + eq
AP006841_0 166 LKSALIANMNHEIRTPLNAIVGFASLLSI---------IDDEKEQ-- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ i++ +e+llrL nd+ dls ie+g
AP006841_0 202 ----------QEYIGLIQSNTEHLLRLMNDVIDLSNIESG 231

AP006841_0583: domain 1 of 1, from 257 to 325: score 72.9, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++++sHEL+TP++aI++ ++lL++ + + l+ eq
AP006841_0 257 AKTTFISTISHELKTPISAIMMSLQLLED------KRVGSLNGEQ-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i++ ++rll++ +lL +++ eag
AP006841_0 296 ----------EQLSKNIRDNSQRLLDITGELLNMTQVEAG 325

AP006841_3211: domain 1 of 1, from 442 to 509: score 70.9, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+n+s +R PL+++ g+++l+ ++++++e r
AP006841_3 442 MKNRFLSNISYHIRIPLNGVVGFSQLIAS--------EPNMPDELR- 479

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey ++i++ +e l rL+nd+Ldlsr+eag
AP006841_3 480 ----------KEYSSIIQKNSEELMRLVNDVLDLSRLEAG 509

AP006841_3210: domain 1 of 1, from 389 to 455: score 68.4, E = 5.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fl+n+sHE+RTPL+a++g++++L + + + ++r
AP006841_3 389 TKSLFLSNMSHEIRTPLNALSGFSSILTD---------ESIDNDTR- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++ +e ll+Lind+ dls ++ g
AP006841_3 426 ----------YQCNDIIQQNSELLLKLINDVIDLSNLDPG 455

AP006841_2112: domain 1 of 1, from 286 to 354: score 68.4, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTPL+aI g++ l+ + +l+ e++
AP006841_2 286 LKSAFLANMSHEIRTPLNAIVGFSNLIAGGI-------VDLDTEEA- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y i + ++ll L++d+Ldls ie+
AP006841_2 325 ----------RDYSALISKNCNYLLTLVSDVLDLSCIESD 354

AP006841_1576: domain 1 of 1, from 368 to 435: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++++ n++HEL+TP+++I+gy+e++ ++ ++l+ e++
AP006841_1 368 LKRQLTQNIAHELKTPVSSIQGYLETIVNN--------ENLPKEKM- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le+ + +++rl+rL++d+ l+r+++
AP006841_1 406 ----------NVFLERCYAQSNRLSRLLRDISVLTRMDEA 435

AP006841_4479: domain 1 of 1, from 830 to 896: score 60.5, E = 9.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ n++HE+RTPLt I+g +e + e ++e+
AP006841_4 830 AKIDFFTNVAHEIRTPLTLIKGPLENIIL--------KKEVDSET-- 866

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++++ +erll+L n+lLd+ + e+
AP006841_4 867 ----------KEDLYIMKQNTERLLNLTNQLLDFRKTETR 896

AP006841_0388: domain 1 of 1, from 19 to 85: score 60.1, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ n+sHE+RTPLt I+ +el+l + ++
AP006841_0 19 AKLRFFTNVSHEFRTPLTLIISQVELMLQ--------KNTIPPSL-- 55

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i++ a+++ Li++lLd+ + +++
AP006841_0 56 ----------HNSIFRIRKHAQQMKLLISELLDFRKFDQN 85

AP006841_0328: domain 1 of 1, from 828 to 893: score 58.5, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k f+ nl HE+RTPL+ Ir+ +e Lle +++ +
AP006841_0 828 SKISFFINLVHEIRTPLSLIRLPLEKLLE---------DKREGRD-- 863

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++i+r +++ll + n+lLd+ ++e+g
AP006841_0 864 ----------AKYLSVIDRNVNYLLGITNQLLDFQKMENG 893

AP006841_4524: domain 1 of 1, from 404 to 470: score 58.2, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ n+sHE+RTPLt I+g + L ++ ++l++
AP006841_4 404 QKLQFFTNISHEIRTPLTLILGPVNKLIKN--------SKLDPSI-- 440

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++r ++rl r++n++Ld+ ri++
AP006841_4 441 ----------QEDVALMKRNVDRLYRIVNQILDFRRIDND 470

AP006841_3858: domain 1 of 1, from 289 to 357: score 58.2, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+ n+ HE++TP+++I+++a++L++ ++ + +
AP006841_3 289 MKNDFINNMTHEFKTPISTISLAAQMLKD---------PAVGKSPQ- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +i +e++rl+ +++ +L++s + +
AP006841_3 326 --------MFQHISGVINDETKRLRFQVEKVLQMSMFDRQ 357

AP006841_0210: domain 1 of 1, from 232 to 298: score 57.6, E = 6.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++n+sHELRTP++a+++ ++l+l e++ q
AP006841_0 232 DQRMFVSNVSHELRTPMAALSAELDLALQ---------KERTVTQ-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ ++ +l++++r +Li+ lL l++++
AP006841_0 268 ---------YQNSIHNALQDSQRVIELIDGLLNLAKADYY 298

AP006841_2199: domain 1 of 1, from 450 to 516: score 57.2, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+ ++ HE+RTPL++I g+++l+ + +e + e+r
AP006841_2 450 MKTAFINSICHEIRTPLNSIVGFSDLIFN---------DEIDKETR- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i++++ l +Li+++L++s ++
AP006841_2 487 ----------EGFSQEIQKSTILLTSLIDNMLEISSLDVS 516

AP006841_4103: domain 1 of 1, from 271 to 336: score 56.0, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++ H+++ PL +I+gy++lL + +e q
AP006841_4 271 AREKLMLAITHDFKAPLGSIIGYTDLLTG---------LTTDERQ-- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+ +++++++ll+L++dlLd+ r++ +
AP006841_4 307 ----------RFYLDNMKSSSQHLLKLVSDLLDFHRLDLN 336

AP006841_2184: domain 1 of 1, from 233 to 299: score 55.5, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a f++++sHEL++P+taI+g +e+ l e+s ++
AP006841_2 233 AEKSFVSHASHELNNPITAIQGECEISLL---------KERSTDE-- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+l++i e++rl++Li+ lL lsr e+
AP006841_2 269 ---------YIEALRRIAGESKRLSNLIRHLLFLSRQEED 299

AP006841_0293: domain 1 of 1, from 141 to 207: score 54.8, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fl+n+sHE++TPL+a+ g++e+L + + ++e r
AP006841_0 141 NKSVFLSNMSHEIKTPLNALAGFSEILIT---------PGIDDEVR- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+ ++ ll+L+nd+ d s ++
AP006841_0 178 ----------AQCNDVIRLNSDLLLHLVNDVVDVSCLDVA 207

AP006841_0886: domain 1 of 1, from 813 to 879: score 53.3, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +++HELRTPLt I++ ++ Lle + + ++ +
AP006841_0 813 ERENFFTSAAHELRTPLTLILAPLQELLE---------HIKASDPL- 849

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l t+++ + +l L+++lL +ieag
AP006841_0 850 ----------YSKLYTMYKNSSSLHTLVDQLLYVQKIEAG 879

AP006841_2197: domain 1 of 1, from 257 to 325: score 53.1, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+ n+ HEL+TP+++ ++ ++Ll+++ ++ +r
AP006841_2 257 MKSDFTNNITHELKTPIAVAYAANDALLNFG-------QADEKAKR- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++ +++++rl+ L++++L++s +
AP006841_2 296 ----------DKYLSISQEQLQRLSGLVEQILTMSMEQRK 325

AP006841_3334: domain 1 of 1, from 396 to 462: score 47.6, E = 4.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f+ n+sH++RTPLt + +e Ll+ ++ e +r
AP006841_3 396 AKLVFFTNISHDFRTPLTLVADPVEQLLA---------DPSLEGDR- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l ++r ++ llrL+n++Ld+ r e+g
AP006841_3 433 ----------RRMLLLVQRNVQILLRLVNQILDFRRYETG 462

AP006841_2738: domain 1 of 1, from 215 to 281: score 44.0, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ n+sHE+ TPL+ r +e+L e d+ lse q+
AP006841_2 215 QQKQFIGNASHEMQTPLAICRNRLEMLME--------DDSLSEAQL- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++t ++ +e++ +L lL ls+i++g
AP006841_2 253 ----------EELIKT-HQTLEHITKLNKSLLLLSKIDNG 281

AP006841_3485: domain 1 of 1, from 828 to 894: score 40.4, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ n+ HE+ TPLt I g +e +l++ +e ++ +
AP006841_3 828 SKLRFFTNITHEFCTPLTLIYGPCEKILAN--------PEIDAYT-- 864

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + i++ +e l++Li +lL++ r+e+g
AP006841_3 865 ----------QKYAKMIQQNTEKLNNLILELLEFRRLETG 894

AP006841_0294: domain 1 of 1, from 443 to 510: score 35.3, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+n+ E+R PL ++ +++ L + +t+l e++
AP006841_0 443 MKEVFLRNITDEIRVPLDTVVELSDRLCR--------ETNLKQEKQ- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey ti+++a l Li ++Ldl+r+e+g
AP006841_0 481 ----------QEYSATIKKCASKLIGLIFNVLDLARLESG 510

AP006841_4228: domain 1 of 1, from 800 to 869: score 34.0, E = 3.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl ++ HELRTPLt I + ++ L + + + ++
AP006841_4 800 KKIDFLIHINHELRTPLTLIYAPLKCLID----------KNETQGLP 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+L l+ i ++a++++++++ +Ld +eag
AP006841_4 837 SYL-------MPQLQLIFNQAQYMREIVDMVLDWNSMEAG 869

AP006841_4370: domain 1 of 1, from 823 to 888: score 28.6, E = 1e-07
*->akseflanlsHELRTPLtaIrgyae...lLleeldkvlagdtelsee
k f+ ++ HE++TPL+ +++ e+ ++ ++ + + e
AP006841_4 823 HKLNFFTYITHEFKTPLSILMAVFEdisIGRN---------NTITGE 860

qrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i r ++rl+ Lin+lL++ e+
AP006841_4 861 EM---------------KIINRNIQRLQFLINQLLEFRSVETD 888


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 1 0|=
-14 37 0|===
-13 137 3|*=========
-12 251 104|======*==========
-11 523 542|=================================== *
-10 805 1006|====================================================== *
-9 856 1039|==========================================================*
-8 718 778|================================================ *
-7 512 490|================================*==
-6 300 282|==================*=
-5 178 154|==========*=
-4 91 82|=====*=
-3 48 43|==*=
-2 35 22|=*=
-1 14 12|*
0 10 6|*
1 4 3|*
2 4 1|*
3 0 0|
4 0 0|
5 1 0|=
6 2 0|=
7 0 0|
8 1 0|=
9 0 0|
10 0 0|
11 2 0|=
12 1 0|=
13 1 0|=
14 0 0|
15 0 0|
16 1 0|=
> 17 45 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 298.5648
P(chi-square) = 0

Total sequences searched: 4578

Whole sequence top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 41
Satisfying E cutoff: 41
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: