Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

2 accessions found for Chlamydophila felis Fe/C-56  

Data for AP006861  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP006861.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP006861_0850 CDS_998326-999378 68.7 9.5e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP006861_0850 1/1 150 215 .. 1 87 [] 68.7 9.5e-20

Alignments of top-scoring domains:
AP006861_0850: domain 1 of 1, from 150 to 215: score 68.7, E = 9.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE+R+PL++I g+a+lL+e el++ +
AP006861_0 150 ELGKMTATLAHEIRNPLSGIAGFASLLKE----------ELPSSRH- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ +++l+ L++ +L++++ +
AP006861_0 186 ----------QRMLSSIIDGTRSLNTLVSSMLEYTKSQPL 215


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 3 0|=
-13 15 0|====
-12 53 22|=====*========
-11 100 119|========================= *
-10 183 221|============================================== *
-9 197 228|================================================== *
-8 145 170|===================================== *
-7 113 107|==========================*==
-6 86 61|===============*======
-5 49 34|========*====
-4 26 18|====*==
-3 11 9|==*
-2 12 5|=*=
-1 4 2|*
0 3 1|*
1 3 0|=
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 86.4050
P(chi-square) = 2.756e-14

Total sequences searched: 1005

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: