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1 accessions found for Thermococcus kodakarensis KOD1  

Data for AP006878  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP006878.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 10 0|==
-13 34 1|*====
-12 135 52|======*==========
-11 291 273|==================================*==
-10 375 507|=============================================== *
-9 458 523|==========================================================*
-8 377 392|================================================*
-7 252 247|==============================*=
-6 170 142|=================*====
-5 92 78|=========*==
-4 34 41|=====*
-3 32 22|==*=
-2 15 11|=*
-1 14 6|*=
0 8 3|*
1 5 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
6 1 0|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 198.3065
P(chi-square) = 1.67e-36

Total sequences searched: 2306

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: