Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

1 accessions found for Magnetospirillum magneticum AMB-1  

Data for AP007255  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: AP007255.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP007255_3665 CDS_4027953-4026337 39.1 3.6e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP007255_3665 1/1 328 394 .. 1 70 [] 39.1 3.6e-11

Alignments of top-scoring domains:
AP007255_3665: domain 1 of 1, from 328 to 394: score 39.1, E = 3.6e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER+ IA +LHD++gQ+L +++ +l+++ ++ p++ + ++ +
AP007255_3 328 ERHSIAKDLHDGLGQTLHLARFKLDRLV-----KALPQelPTATLAL 369

eirelarealaevRrllgdLRpaal<-*
e+ +l++ea evR l + L p+al
AP007255_3 370 ELIGLLSEASGEVRSLTSKLSPPAL 394


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 13 0|=
-13 67 0|======
-12 126 50|===*======
-11 214 417|================= *
-10 542 969|========================================== *
-9 744 1100|==========================================================*
-8 652 848|=================================================== *
-7 622 533|========================================*=======
-6 503 301|=======================*===============
-5 429 161|============*====================
-4 230 84|======*===========
-3 158 43|===*=========
-2 99 22|=*======
-1 78 11|*=====
0 30 5|*==
1 12 2|*
2 16 1|*=
3 9 0|=
4 5 0|=
5 5 0|=
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2461.7739
P(chi-square) = 0

Total sequences searched: 4559

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: