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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xanthomonas oryzae pv. oryzae MAFF 311018  

Data for AP008229  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP008229.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP008229_2724 CDS_3075284-3073107 94.0 2.8e-26 1
AP008229_2639 CDS_2947960-2952054 91.9 1.1e-25 1
AP008229_1727 CDS_1906560-1910210 85.1 9.8e-24 1
AP008229_1726 CDS_1903000-1906563 85.0 1.1e-23 1
AP008229_1725 CDS_1899135-1902710 84.1 1.9e-23 1
AP008229_0482 CDS_530108-527799 83.9 2.1e-23 1
AP008229_3464 CDS_3920546-3921889 81.0 1.4e-22 1
AP008229_1101 CDS_1199817-1198651 76.6 2.4e-21 1
AP008229_2200 CDS_2439024-2442419 67.0 1.3e-18 1
AP008229_1475 CDS_1616464-1614851 66.8 1.5e-18 1
AP008229_0635 CDS_687995-689890 64.5 6.5e-18 1
AP008229_3621 CDS_4098443-4095783 63.7 1.1e-17 1
AP008229_0308 CDS_333489-336941 63.6 1.2e-17 1
AP008229_3551 CDS_4012834-4011563 55.8 2e-15 1
AP008229_4225 CDS_4777558-4776503 54.9 3.5e-15 1
AP008229_1012 CDS_1108666-1106021 54.1 6e-15 1
AP008229_1446 CDS_1576008-1574815 52.0 2.4e-14 1
AP008229_1004 CDS_1097575-1098960 51.8 2.6e-14 1
AP008229_1084 CDS_1183606-1184988 51.4 3.4e-14 1
AP008229_3714 CDS_4199964-4198153 48.1 2.9e-13 1
AP008229_3340 CDS_3802189-3800897 47.7 3.7e-13 1
AP008229_1378 CDS_1506563-1507273 43.3 6.7e-12 1
AP008229_2258 CDS_2507616-2508812 42.7 1e-11 1
AP008229_3970 CDS_4474693-4476135 41.5 2.1e-11 1
AP008229_0646 CDS_699915-698701 38.0 2.2e-10 1
AP008229_0219 CDS_240131-238887 33.5 3.9e-09 1
AP008229_2988 CDS_3391454-3389832 28.1 1.4e-07 1
AP008229_3652 CDS_4128353-4129852 27.2 2.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP008229_2724 1/1 188 253 .. 1 87 [] 94.0 2.8e-26
AP008229_2639 1/1 643 708 .. 1 87 [] 91.9 1.1e-25
AP008229_1727 1/1 845 910 .. 1 87 [] 85.1 9.8e-24
AP008229_1726 1/1 809 874 .. 1 87 [] 85.0 1.1e-23
AP008229_1725 1/1 810 875 .. 1 87 [] 84.1 1.9e-23
AP008229_0482 1/1 110 175 .. 1 87 [] 83.9 2.1e-23
AP008229_3464 1/1 214 278 .. 1 87 [] 81.0 1.4e-22
AP008229_1101 1/1 179 245 .. 1 87 [] 76.6 2.4e-21
AP008229_2200 1/1 746 812 .. 1 87 [] 67.0 1.3e-18
AP008229_1475 1/1 315 381 .. 1 87 [] 66.8 1.5e-18
AP008229_0635 1/1 251 317 .. 1 87 [] 64.5 6.5e-18
AP008229_3621 1/1 652 720 .. 1 87 [] 63.7 1.1e-17
AP008229_0308 1/1 784 850 .. 1 87 [] 63.6 1.2e-17
AP008229_3551 1/1 213 279 .. 1 87 [] 55.8 2e-15
AP008229_4225 1/1 122 181 .. 1 79 [. 54.9 3.5e-15
AP008229_1012 1/1 516 581 .. 1 87 [] 54.1 6e-15
AP008229_1446 1/1 176 240 .. 1 87 [] 52.0 2.4e-14
AP008229_1004 1/1 242 307 .. 1 87 [] 51.8 2.6e-14
AP008229_1084 1/1 241 306 .. 1 87 [] 51.4 3.4e-14
AP008229_3714 1/1 368 436 .. 1 87 [] 48.1 2.9e-13
AP008229_3340 1/1 212 278 .. 1 87 [] 47.7 3.7e-13
AP008229_1378 1/1 12 77 .. 1 87 [] 43.3 6.7e-12
AP008229_2258 1/1 171 241 .. 1 87 [] 42.7 1e-11
AP008229_3970 1/1 268 334 .. 1 87 [] 41.5 2.1e-11
AP008229_0646 1/1 308 354 .. 1 68 [. 38.0 2.2e-10
AP008229_0219 1/1 182 247 .. 1 87 [] 33.5 3.9e-09
AP008229_2988 1/1 160 230 .. 1 87 [] 28.1 1.4e-07
AP008229_3652 1/1 292 349 .. 1 87 [] 27.2 2.5e-07

Alignments of top-scoring domains:
AP008229_2724: domain 1 of 1, from 188 to 253: score 94.0, E = 2.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l+ eq
AP008229_2 188 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDVEQ-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ti+ +a++ll+L++++Ld+s ieag
AP008229_2 224 ----------KECLNTIQASARSLLSLVEEVLDISAIEAG 253

AP008229_2639: domain 1 of 1, from 643 to 708: score 91.9, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTP++aI+g++ lL++ +el+
AP008229_2 643 SKSDFLANMSHEIRTPMNAILGMLYLLQR---------SELPGAA-- 678

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r+a+ ll++ind+Ld+s+ieag
AP008229_2 679 ----------QDMVAKIDRSARTLLEIINDILDFSKIEAG 708

AP008229_1727: domain 1 of 1, from 845 to 910: score 85.1, E = 9.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl+ t l+ q
AP008229_1 845 AKTRFLATLGHEVRTPMTGVLGMSELLLK---------TSLDITQ-- 880

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+i+r++ +llrL+nd Ldl+rie+g
AP008229_1 881 ----------RSYTESIRRAGAHLLRLVNDALDLARIESG 910

AP008229_1726: domain 1 of 1, from 809 to 874: score 85.0, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla+l HE RTP+t+++g++elLl+ t+l+++q
AP008229_1 809 AKSHFLATLGHEVRTPMTGVLGMSELLLA---------TPLNAKQ-- 844

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i++++ +llrL+nd Ldl+rieag
AP008229_1 845 ----------RSHVDAIRNAGTHLLRLVNDALDLARIEAG 874

AP008229_1725: domain 1 of 1, from 810 to 875: score 84.1, E = 1.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLl t+l+ q
AP008229_1 810 AKTRFLATLGHEVRTPMTGVLGMSELLLQ---------TPLDGRQ-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y + i+ ++++llrL+nd Ldl+rieag
AP008229_1 846 ----------QGYASAIQLAGKHLLRLVNDALDLARIEAG 875

AP008229_0482: domain 1 of 1, from 110 to 175: score 83.9, E = 2.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHE+RTPL++I+ ++el+ + ls +q
AP008229_0 110 AKGEFLATMSHEIRTPLNGIIPMLELISS---------GQLSLDQ-- 145

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+t+ +++ +llr+++d+Ld+s++ea+
AP008229_0 146 ----------RDMLQTATSSSLQLLRIVDDILDYSKLEAN 175

AP008229_3464: domain 1 of 1, from 214 to 278: score 81.0, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt++ gy+++L ++ +e
AP008229_3 214 VRRDFVANVSHELRTPLTVVHGYLDMLDP---------EDFPESG-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++++++r+ +L++dlL+lsr+e++
AP008229_3 250 -----------PMLAEMRKQSQRMAQLVEDLLTLSRLESQ 278

AP008229_1101: domain 1 of 1, from 179 to 245: score 76.6, E = 2.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +++l+e+
AP008229_1 179 RDREFNADVSHELRTPLAVIRGATELLLT--------RPNLDEKV-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r+ +++++Li lL lsr e g
AP008229_1 216 ----------LQRLQRIQRAEQQCSDLIGSLLLLSRNERG 245

AP008229_2200: domain 1 of 1, from 746 to 812: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPL+aI+g + l++ e++e+++l
AP008229_2 746 VKDEFLATLSHELRTPLNAILGWSRLMQS----------EMTEPTHL 782

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l +i+r+a+ ++i+dlLd+s i +g
AP008229_2 783 GRG----------LVIIERSARAQTQIIDDLLDMSAILSG 812

AP008229_1475: domain 1 of 1, from 315 to 381: score 66.8, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PLtaI +++lL+e +++ ++ +
AP008229_1 315 AMGRFSASLAHEIRNPLTAICYASQLLEE--------SPDIGDAD-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l++i+++ +r + +++ +L l+r e
AP008229_1 352 ----------RRLLQIIHQQCQRTNGIVESVLALARRERA 381

AP008229_0635: domain 1 of 1, from 251 to 317: score 64.5, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+lsHELRTPLt+I+g +elLl +++ +++ + +
AP008229_0 251 LKDEFLATLSHELRTPLTTILGWSELLLQRVE-----EGHTTYKG-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
AP008229_0 291 -------------LSVIASSARAQKRLISDMLDLSSMLLG 317

AP008229_3621: domain 1 of 1, from 652 to 720: score 63.7, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH+LR PL++++g a+ L ++ +++++ +r
AP008229_3 652 LRSALLSSVSHDLRSPLASMIGSASSLASYG-------DAMDAHDR- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ti+ e+erl+r i++lLd++r+++
AP008229_3 691 ----------HSLLDTIQLEGERLDRYIQNLLDMTRLGHT 720

AP008229_0308: domain 1 of 1, from 784 to 850: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+ +PL+a r++a++L+e ++++ e++
AP008229_0 784 SKTRFLAAISHDVLQPLNAARLFASALRE---------SHQNNEEQ- 820

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e+++ +++ ++L++ lLd sr++ag
AP008229_0 821 ----------RHLAERVDASLRAAEELLDGLLDVSRLDAG 850

AP008229_3551: domain 1 of 1, from 213 to 279: score 55.8, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+Ir +++++l+ d+els +
AP008229_3 213 RERNFTRDASHELRTPLTVIRVASDMALA--------DDELSTRT-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r+++ +++ i+ +L l+r +
AP008229_3 250 ----------QRSLRRIQRAGHEMEAVIDAFLILAREAEV 279

AP008229_4225: domain 1 of 1, from 122 to 181: score 54.9, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s l +l+HELR+PL++++g+a+lL +++ + ++e++
AP008229_4 122 ALSAALKGLAHELRNPLAGLKGAAQLLARRS-------AGRDEDE-- 159

peLRledpeyreyletilreaerllrLindlL<-*
re+le i e+erl+ L+++lL
AP008229_4 160 ----------RELLELIGTEIERLNTLLERLL 181

AP008229_1012: domain 1 of 1, from 516 to 581: score 54.1, E = 6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++++L+ + ++
AP008229_1 516 YKTRFVASAVHDLLQPLNAARMFVSVLRG---------QVHDAGS-- 551

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+ ++ ++++n lLd+sr+eag
AP008229_1 552 ----------ARVVDNIDGALAAQDAILNSLLDISRLEAG 581

AP008229_1446: domain 1 of 1, from 176 to 240: score 52.0, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a+l+HELRTPL+a +g ++ +l+e++ ++ +eq
AP008229_1 176 ELRDSSAMLAHELRTPLNAAMGRVQGMLDEVF-------PREPEQ-- 213

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r++e+++rLi dl s ++ag
AP008229_1 214 -------------LRLVHRQLEQINRLIGDLHLVSLARAG 240

AP008229_1004: domain 1 of 1, from 242 to 307: score 51.8, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a ++H++RTPL+a+r+ a+l+ + + ++ ++
AP008229_1 242 TLRAFMAEAAHQMRTPLAALRAQAQLAMD----------DDDPREM- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i+r a +++rL+n+lL + +
AP008229_1 278 ----------QRSLVAIERNASHMSRLLNQLLSDASVTHR 307

AP008229_1084: domain 1 of 1, from 241 to 306: score 51.4, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTP++a++ +a L+ ++++e+r
AP008229_1 241 RERRFIADAAHELRTPIAALKVHAANLRL----------AANAEER- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++ + r++r+i +lL lsr ea
AP008229_1 277 ----------DESQQQLDANVLRIERMIAQLLALSRVEAV 306

AP008229_3714: domain 1 of 1, from 368 to 436: score 48.1, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL + g+++ L + + +++ +e+
AP008229_3 368 ELEAFSYSVSHDLRAPLRHVAGFSDKLAR-------HLGDAADEKS- 406

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y e+i ++a+r+ +Li+dlL +sr++ g
AP008229_3 407 ----------RHYMEVISSSARRMASLIDDLLVYSRLGRG 436

AP008229_3340: domain 1 of 1, from 212 to 278: score 47.7, E = 3.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++sHELRTP+++I ++el+l+ ++ +++ +
AP008229_3 212 RERAFIDSASHELRTPIAVIGNAVELALD---------QPGTPPAV- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++i + + + ++Li lL l++
AP008229_3 249 ----------RHQLQRIAQTSASVEQLITLLLVLAKDPGR 278

AP008229_1378: domain 1 of 1, from 12 to 77: score 43.3, E = 6.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l +l HE++ PL++Ir ++elL e + l +
AP008229_1 12 YVVQYLQSLTHEMKRPLAVIRSASELLTE---------PVLETDR-- 47

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +i+ + +rl + i+ lL l+ e+
AP008229_1 48 ----------QHFVASIRAQEQRLTETIDKLLALAEVEQH 77

AP008229_2258: domain 1 of 1, from 171 to 241: score 42.7, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HE ++PL+aI + +++++l ++ ++ ++
AP008229_2 171 SMGGLAASIAHEVNQPLAAIVTSGNACQRWL--------AQQPPNLA 209

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +le++l +a r +++i +++ l+r ea
AP008229_2 210 KA--------DAALERMLADAGRASAIIARMRALARGEAS 241

AP008229_3970: domain 1 of 1, from 268 to 334: score 41.5, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HE+R+P++++r+++e + + ++++++
AP008229_3 268 ALGRMTATVAHEIRNPIATMRLALENEIA--------RRDATPDD-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l +++rl+ ++ lL + +
AP008229_3 305 ----------AAHGELMLGQIRRLDGVVESLLGMVQPIRL 334

AP008229_0646: domain 1 of 1, from 308 to 354: score 38.0, E = 2.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+++++H+LRTPL+a++ a+l+ + + ++++q
AP008229_0 308 AQNRFISTMRHQLRTPLNALINCAQLIDT---------EQMPAQQ-- 343

peLRledpeyreyletilrea<-*
re+l+ + +a
AP008229_0 344 ----------RELLQAVTVSA 354

AP008229_0219: domain 1 of 1, from 182 to 247: score 33.5, E = 3.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ l+H+LR+PL ++ + +++L + l+
AP008229_0 182 LREEFIGILAHDLRNPLQSMHAVVDVLSI---------DQLNQHY-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++r+++r+++Li+ d++r +
AP008229_0 218 ----------GGSIRSMQRSLRRMEELIDFACDFARGIER 247

AP008229_2988: domain 1 of 1, from 160 to 230: score 28.1, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++e++++ a+ ++ ++e +
AP008229_2 160 ALGQLTGGIAHDFNNLLQVMSGHLEVIQM-----MASAGAGNAERI- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + +a L ++lL +sr +
AP008229_2 201 ----------AFSAEHAAAAAAKAATLTQQLLAFSRKQKL 230

AP008229_3652: domain 1 of 1, from 292 to 349: score 27.2, E = 2.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++H+LRTPL+ +++ + L+
AP008229_3 292 ERTHMVAAIAHDLRTPLARLSFRLNGLQP------------------ 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l +++ + ++i+ L + ++
AP008229_3 321 -----------PLRDKALADIDEMKAMISAALHFIHNDSH 349


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 2 0|=
-14 6 0|=
-13 49 3|*===
-12 203 99|======*=======
-11 423 518|============================= *
-10 711 961|================================================ *
-9 838 992|======================================================== *
-8 764 743|=================================================*=
-7 590 468|===============================*========
-6 302 269|=================*===
-5 203 147|=========*====
-4 116 79|=====*==
-3 55 41|==*=
-2 41 21|=*=
-1 15 11|*
0 8 5|*
1 5 3|*
> 2 41 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 309.3784
P(chi-square) = 0

Total sequences searched: 4372

Whole sequence top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 28
Satisfying E cutoff: 28
Total memory: 32K


Acknowledgements:

This research is funded by:

Developed by: