Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Synechococcus elongatus PCC 6301  

Data for AP008231  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP008231.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP008231_0882 CDS_983797-981533 101.3 1.4e-28 1
AP008231_1039 CDS_1156979-1155246 93.7 2.1e-26 1
AP008231_0618 CDS_689700-691586 91.1 1.1e-25 1
AP008231_2278 CDS_2425674-2428607 88.2 7.6e-25 1
AP008231_2222 CDS_2373098-2371650 84.2 9.7e-24 1
AP008231_0534 CDS_596849-598090 82.0 4.2e-23 1
AP008231_0043 CDS_52329-53639 78.5 4e-22 1
AP008231_2279 CDS_2428600-2429835 74.0 7.7e-21 2
AP008231_1818 CDS_1964013-1965926 66.5 1e-18 1
AP008231_1856 CDS_2008783-2009775 39.6 4.3e-11 1
AP008231_0198 CDS_225956-229453 38.2 1.1e-10 1
AP008231_1065 CDS_1178871-1177645 36.7 3e-10 1
AP008231_1978 CDS_2122239-2121040 36.1 4.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP008231_0882 1/1 383 451 .. 1 87 [] 101.3 1.4e-28
AP008231_1039 1/1 334 401 .. 1 87 [] 93.7 2.1e-26
AP008231_0618 1/1 360 428 .. 1 87 [] 91.1 1.1e-25
AP008231_2278 1/1 477 546 .. 1 87 [] 88.2 7.6e-25
AP008231_2222 1/1 257 324 .. 1 87 [] 84.2 9.7e-24
AP008231_0534 1/1 169 233 .. 1 87 [] 82.0 4.2e-23
AP008231_0043 1/1 200 267 .. 1 87 [] 78.5 4e-22
AP008231_1818 1/1 399 466 .. 1 87 [] 66.5 1e-18
AP008231_2279 1/2 7 71 .. 1 87 [] 55.7 1.2e-15
AP008231_1856 1/1 73 140 .. 1 87 [] 39.6 4.3e-11
AP008231_0198 1/1 940 1007 .. 1 87 [] 38.2 1.1e-10
AP008231_1065 1/1 160 226 .. 1 87 [] 36.7 3e-10
AP008231_1978 1/1 163 237 .. 1 87 [] 36.1 4.2e-10

Alignments of top-scoring domains:
AP008231_0882: domain 1 of 1, from 383 to 451: score 101.3, E = 1.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efla++sHELRTPLt ++g++++Ll++++ ++l+e q
AP008231_0 383 AKGEFLATMSHELRTPLTCVIGMSSTLLRWAF------GPLTERQ-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey++ i++++e+ll+Lind+Ldls+ieag
AP008231_0 422 ----------REYIKAIHDSGEHLLELINDILDLSQIEAG 451

AP008231_1039: domain 1 of 1, from 334 to 401: score 93.7, E = 2.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++flan sHELRTPLt+++gy++lL+++l +e +ee
AP008231_1 334 LKTDFLANTSHELRTPLTGMIGYLQLLQDDL-------AETPEER-- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ ++++a +ll +ind+Ld++rieag
AP008231_1 372 ----------QEFIAGAYHSALHLLGIINDILDIARIEAG 401

AP008231_0618: domain 1 of 1, from 360 to 428: score 91.1, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f++n+sHELRTPL I+ ++e+L +++ ++lsee+r
AP008231_0 360 AKSQFISNVSHELRTPLFNIKSFIETLHDYG-------DDLSEEER- 398

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+t+ +e++rl rL+nd+Ld s++e++
AP008231_0 399 ----------REFLSTANHETDRLTRLVNDVLDPSWLESN 428

AP008231_2278: domain 1 of 1, from 477 to 546: score 88.2, E = 7.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+gy+e++ ee++ + e++
AP008231_2 477 AKSAFLANMSHELRTPLNAIIGYSEMMMEEAE------DGIEVEEL- 516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i +++++ll+Lin +Ldls+ieag
AP008231_2 517 ----------LPDFRKINNAGKHLLELINSILDLSKIEAG 546

AP008231_2222: domain 1 of 1, from 257 to 324: score 84.2, E = 9.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHEL+TPLt+I+gy++ Ll+++ ++l++ q
AP008231_2 257 QQQQFVGNVSHELKTPLTVISGYLQSLLRRG-------DNLNSYQ-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++let+ eaer r+++dlLdl+r ++g
AP008231_2 295 ----------NQALETASAEAERTIRMLQDLLDLARVDSG 324

AP008231_0534: domain 1 of 1, from 169 to 233: score 82.0, E = 4.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HEL+TPLt+Ir++ae+L++ l +e
AP008231_0 169 QRNRWVPDVAHELKTPLTSIRLLAEALRD----------RLQDEP-- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++l e++rl +L++dlL+lsr+e+g
AP008231_0 204 ----------QVWVDRLLGETQRLGQLVQDLLELSRLEQG 233

AP008231_0043: domain 1 of 1, from 200 to 267: score 78.5, E = 4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sHELR+P+++I+++++++l+ + + l +eq
AP008231_0 200 QLKQFTADASHELRNPIATIQANVQAALT-------EPQGLAPEQ-- 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i+r ++rl +L++dlL l+r ++g
AP008231_0 238 ----------QQVLQVIERLTRRLGSLVDDLLFLARQDSG 267

AP008231_1818: domain 1 of 1, from 399 to 466: score 66.5, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s ++a + HELRTPL++++ +e L + ++++s++ r
AP008231_1 399 TRSNLTAIIGHELRTPLSTVQVCLESLAT--------EPDMSADLR- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+l++aerl+ L++d+L+lsr+e+g
AP008231_1 437 ----------QVMLQTALDDAERLRLLVQDFLTLSRLESG 466

AP008231_2279: domain 1 of 2, from 7 to 71: score 55.7, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la+++HELRTP++aI+gy++lLle ++ +
AP008231_2 7 SLAR-LAHWRHELRTPINAILGYSQLLLE----------DWAGTAI- 41

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le+i+++++ llrL+n++Ld + g
AP008231_2 42 ----------ATDLERIESAGQELLRLVNEILDPHSSDRG 71

AP008231_1856: domain 1 of 1, from 73 to 140: score 39.6, E = 4.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ la ++HELR PL++++ + +l+l++l e ++e+
AP008231_1 73 FQAGYLARAAHELRSPLSTLMSLNQLILADL-------CESPAEE-- 110

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++++ + +a+rll+L+++l s+ ++g
AP008231_1 111 ----------RVAVQRSQIAARRLLQLLDQLIVVSQWQSG 140

AP008231_0198: domain 1 of 1, from 940 to 1007: score 38.2, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+L PL I+++++ L ++ ++l++e
AP008231_0 940 ELQEFAFVASHDLQEPLRKIQAFSDRLIART-------SNLDDES-- 977

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ ++a r++ Li dlL +sr +
AP008231_0 978 ----------QDYLRRMASAAGRMQTLIIDLLNYSRVNTR 1007

AP008231_1065: domain 1 of 1, from 160 to 226: score 36.7, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l l H++++PLta+r++a+lLl+ ++ee +
AP008231_1 160 QEQDRLEVLLHQIKNPLTALRTFAKLLLR---------RMQPEERN- 196

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++lre++rl +L+n l s+
AP008231_1 197 ----------RQLAASLLRESDRLADLLNLLNSPSQSAPT 226

AP008231_1978: domain 1 of 1, from 163 to 237: score 36.1, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a ++H+LR+PLta ++++++++ ++ ++ + +++++++
AP008231_1 163 FLEQVIALVAHDLRNPLTAALLAVDTIQIRS----QSFSVATAKEMQ 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ ++++++ ++r+i ++L+ +r +
AP008231_1 206 GL--------CSLFDQARSQLREIERMIAEILEATRHSGE 237


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 9 0|==
-13 29 1|*===
-12 80 57|=======*==
-11 219 299|============================ *
-10 419 555|===================================================== *
-9 466 573|==========================================================*
-8 418 429|=====================================================*
-7 322 270|=================================*=======
-6 220 155|===================*========
-5 129 85|==========*======
-4 91 45|=====*======
-3 42 24|==*===
-2 24 12|=*=
-1 17 6|*==
0 10 3|*=
1 8 1|*
2 4 0|=
3 2 0|=
4 0 0|
5 1 0|=
> 6 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 227.0427
P(chi-square) = 3.326e-312

Total sequences searched: 2525

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: