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Classification of phyla is from NCBI page
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4 accessions found for Rhodococcus erythropolis PR4  

Data for AP008957  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP008957.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP008957_0988 CDS_1100543-1101994 76.1 4.7e-21 1
AP008957_3723 CDS_4067806-4065266 69.9 2.6e-19 1
AP008957_1621 CDS_1761492-1762727 68.8 5.6e-19 1
AP008957_4516 CDS_4954329-4953334 64.3 1.1e-17 1
AP008957_2169 CDS_2362460-2364199 63.2 2.1e-17 1
AP008957_1945 CDS_2132403-2131009 60.8 1e-16 1
AP008957_4397 CDS_4829926-4828547 55.5 3.3e-15 1
AP008957_1019 CDS_1136279-1134825 47.5 6e-13 1
AP008957_4603 CDS_5042319-5043596 45.0 3e-12 1
AP008957_4585 CDS_5022038-5023381 42.1 2.1e-11 1
AP008957_0449 CDS_501821-500442 35.2 1.8e-09 1
AP008957_1053 CDS_1176095-1174989 33.3 6.5e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP008957_0988 1/1 259 323 .. 1 87 [] 76.1 4.7e-21
AP008957_3723 1/1 617 685 .. 1 87 [] 69.9 2.6e-19
AP008957_1621 1/1 153 219 .. 1 87 [] 68.8 5.6e-19
AP008957_4516 1/1 121 185 .. 1 87 [] 64.3 1.1e-17
AP008957_2169 1/1 298 365 .. 1 87 [] 63.2 2.1e-17
AP008957_1945 1/1 250 317 .. 1 87 [] 60.8 1e-16
AP008957_4397 1/1 231 303 .. 1 87 [] 55.5 3.3e-15
AP008957_1019 1/1 260 325 .. 1 87 [] 47.5 6e-13
AP008957_4603 1/1 219 277 .. 1 87 [] 45.0 3e-12
AP008957_4585 1/1 222 288 .. 1 87 [] 42.1 2.1e-11
AP008957_0449 1/1 212 278 .. 1 87 [] 35.2 1.8e-09
AP008957_1053 1/1 146 210 .. 1 87 [] 33.3 6.5e-09

Alignments of top-scoring domains:
AP008957_0988: domain 1 of 1, from 259 to 323: score 76.1, E = 4.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTPLt+Irg+ael + +++++ +
AP008957_0 259 KMRRFVGDASHELRTPLTTIRGFAELYRQ---------GAMTDTE-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+ ea r+ L++dlL l+r++++
AP008957_0 295 -----------TLMNRIEGEASRMGLLVEDLLMLARLDEQ 323

AP008957_3723: domain 1 of 1, from 617 to 685: score 69.9, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPL++++++++ L+ d e s+e++
AP008957_3 617 LRRALLSAVSHDLRTPLAGVKAAVSSLRS-------DDIEFSPEDT- 655

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti+++a++l +L+ +lLd sr+ ag
AP008957_3 656 ----------AELLATIEESADQLTALVGNLLDSSRLAAG 685

AP008957_1621: domain 1 of 1, from 153 to 219: score 68.8, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a++++ae+Lle ++ ++e +
AP008957_1 153 TRRDFVANVSHELKTPVGAMSLLAEALLE---------SADDPESV- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e++l e+ rl +++ +l lsr++
AP008957_1 190 ----------RHFGERVLGESIRLGKMVTELIALSRLQGA 219

AP008957_4516: domain 1 of 1, from 121 to 185: score 64.3, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ n+sHELRTP+ta+++++e +++ +e ++ +
AP008957_4 121 YRRELIGNVSHELRTPITALQAMLENVVDGV-------EEPDPAMM- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++lr++erl +L+ dlLdls++e g
AP008957_4 160 --------------KSALRQTERLGALVADLLDLSKLEGG 185

AP008957_2169: domain 1 of 1, from 298 to 365: score 63.2, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPLt++r++a+l+ +++ ++l++
AP008957_2 298 LQKRFTSDVSHELRTPLTTVRMAADLIYDGS-------ENLDPML-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e + e++r + L+ dlL++sr +ag
AP008957_2 336 ----------RRSSELLVAELDRFEGLLADLLEISRHDAG 365

AP008957_1945: domain 1 of 1, from 250 to 317: score 60.8, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+a+ +e+L+ee ++l+++
AP008957_1 250 QSRRFVADVSHELRTPLAALVPVSEILREEI-------PNLPPDA-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++ +e+ l rL++dl ++sr +++
AP008957_1 288 ----------AAAARIVSSEIGKLTRLVEDLIEMSRHDSQ 317

AP008957_4397: domain 1 of 1, from 231 to 303: score 55.5, E = 3.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+++a++ HELRTPLt++r++ elL + + +g + ++e++
AP008957_4 231 RQSRLVADAGHELRTPLTSLRTNMELLIASSR---PGAPQIPDEDM- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + ++e l+ L+ dl dl+r +a+
AP008957_4 274 ----------AELRADVVAQIEELSTLVGDLVDLAREDAP 303

AP008957_1019: domain 1 of 1, from 260 to 325: score 47.5, E = 6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++++sHELR PL++I +++el+ + + ++
AP008957_1 260 AQQRFVSDASHELRSPLSTITTALELAHR---------RPDLLDD-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +l ea+r+++Li+dlL l+r ++
AP008957_1 296 ----------ALIEDALLPEARRMRQLIEDLLILARSDES 325

AP008957_4603: domain 1 of 1, from 219 to 277: score 45.0, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +an++H+LRTP++++ g+aelL
AP008957_4 219 AEKRVTANIAHDLRTPISGLVGAAELLPP------------------ 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e +++ ++ l+rL +d+ + +r+++
AP008957_4 248 ----------GRPTELVRDGVHKLRRLAEDVIEVARLDTT 277

AP008957_4585: domain 1 of 1, from 222 to 288: score 42.1, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+++ +HELRTPLta+r+ +e+L ++l+ eqr
AP008957_4 222 AARDFASASAHELRTPLTAMRTDIEVLSI---------HDLDHEQR- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + r+ r ++ ++dl l++ e
AP008957_4 259 ----------REILTDLARAQGRVESTLRDLERLAKGELS 288

AP008957_0449: domain 1 of 1, from 212 to 278: score 35.2, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++ +HELRTPLt++r+ +e+L + +l+e qr
AP008957_0 212 SARDFARVSAHELRTPLTSMRTDLEVLAT---------LDLTESQR- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + +l++ ++++r + dl +l+ e
AP008957_0 249 ----------RELSSELLEAQRQIERTLTDLETLALGEVA 278

AP008957_1053: domain 1 of 1, from 146 to 210: score 33.3, E = 6.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++la+l+HELRTP++++ +y++ +++ + + +
AP008957_1 146 VRKRLLADLAHELRTPVSTLAAYVDGIED---------GVVPTDP-- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++++erl+rL dl d s +++
AP008957_1 182 -----------SSWSVMRDQLERLRRLSCDLADVSAADEH 210


Histogram of all scores:
score obs exp (one = represents 21 sequences)
----- --- ---
-15 1 0|=
-14 11 0|=
-13 65 4|*===
-12 254 137|======*======
-11 561 715|=========================== *
-10 1070 1326|=================================================== *
-9 1226 1370|==========================================================*
-8 1064 1025|================================================*==
-7 734 646|==============================*====
-6 465 372|=================*=====
-5 275 204|=========*====
-4 140 109|=====*=
-3 77 57|==*=
-2 33 30|=*
-1 21 15|*
0 12 8|*
1 6 4|*
2 2 2|*
3 0 1|*
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 15 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 275.7097
P(chi-square) = 0

Total sequences searched: 6034

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: