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Classification of phyla is from NCBI page
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106 projects found  

2 accessions found for Corynebacterium glutamicum R  

Data for AP009044  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009044.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009044_0876 CDS_951761-953260 74.4 7.3e-21 1
AP009044_0478 CDS_531027-532268 74.0 9.4e-21 1
AP009044_0363 CDS_396413-394944 71.3 5.3e-20 1
AP009044_2560 CDS_2773145-2771688 57.8 3.7e-16 1
AP009044_2618 CDS_2833221-2834339 47.7 2.6e-13 1
AP009044_1003 CDS_1093362-1094801 46.8 4.7e-13 1
AP009044_0123 CDS_142991-144190 40.4 3.2e-11 1
AP009044_0547 CDS_600805-599771 39.1 7.3e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009044_0876 1/1 252 319 .. 1 87 [] 74.4 7.3e-21
AP009044_0478 1/1 156 222 .. 1 87 [] 74.0 9.4e-21
AP009044_0363 1/1 258 322 .. 1 87 [] 71.3 5.3e-20
AP009044_2560 1/1 266 330 .. 1 87 [] 57.8 3.7e-16
AP009044_2618 1/1 147 211 .. 1 87 [] 47.7 2.6e-13
AP009044_1003 1/1 246 318 .. 1 87 [] 46.8 4.7e-13
AP009044_0123 1/1 143 207 .. 1 87 [] 40.4 3.2e-11
AP009044_0547 1/1 144 209 .. 1 87 [] 39.1 7.3e-11

Alignments of top-scoring domains:
AP009044_0876: domain 1 of 1, from 252 to 319: score 74.4, E = 7.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + +++els+
AP009044_0 252 LQRQFTSDVSHELRTPLTTVRMAADLIAD-------SEDELSPGA-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ + + re++r ++L++dlL++sr +ag
AP009044_0 290 ----------RRASQLMNRELDRFESLLSDLLEISRHDAG 319

AP009044_0478: domain 1 of 1, from 156 to 222: score 74.0, E = 9.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ ++ ++ae+L e + ++eq+
AP009044_0 156 ARRDFVANVSHELKTPVGGMALLAEALME---------SSDDPEQV- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++rea+r+ ++in+l ls+++
AP009044_0 193 ----------EYFGSRLHREAHRMADMINELISLSKLQGA 222

AP009044_0363: domain 1 of 1, from 258 to 322: score 71.3, E = 5.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++ HELRTP+t++rg +elL + + +eeq
AP009044_0 258 DQRQFVDDAGHELRTPITVVRGQLELLAT----------TPPEEQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + e++r++r++ndlL+l+ +++g
AP009044_0 293 ----------ARSIELATTELDRMSRMVNDLLTLAVADSG 322

AP009044_2560: domain 1 of 1, from 266 to 330: score 57.8, E = 3.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+++g++el ++++
AP009044_2 266 QMRRFVGDASHELRTPLTSVKGFTELYSS----------GATDDA-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i ea+r++ L++dlL l+r+e +
AP009044_2 301 ----------NWVMSKIGGEAQRMSVLVEDLLSLTRAEGQ 330

AP009044_2618: domain 1 of 1, from 147 to 211: score 47.7, E = 2.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsHE++TPL++++ y++ L++++ e+++++
AP009044_2 147 LRRNMLSDLSHEMNTPLSVLLVYVDGLQDGM-------VEWDADT-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ rl+rL +dl d sr+++
AP009044_2 185 -------------HAVFAEQLGRLSRLTSDLDDVSRAQEH 211

AP009044_1003: domain 1 of 1, from 246 to 318: score 46.8, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++s+++a++ HEL+TPLt++r+++elLl+ + g + + e++
AP009044_1 246 RQSQLVADAGHELKTPLTSMRTNIELLLM----AtNSGGSGIPKEEL 288

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l + +++Li dl dl+r e+
AP009044_1 289 -----------DGLRRDVLAQMTEMSDLIGDLVDLAREETA 318

AP009044_0123: domain 1 of 1, from 143 to 207: score 40.4, E = 3.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HE+ TPL+++ y + L++++ +++ +
AP009044_0 143 VRRQMLSDLAHEMGTPLSVLTVYFDGLQDGV-------VDWNNAT-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ rl rL +d+ d sr+++
AP009044_0 181 -------------HTIMADQLTRLTRLMEDIDDVSRAQEH 207

AP009044_0547: domain 1 of 1, from 144 to 209: score 39.1, E = 7.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++n+sHEL+TP+++I+++a+++l+ + +eq+l
AP009044_0 144 RQRRFASNASHELKTPIATIQTMADVALASG-----------DEQIL 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l ++++ r + + lL+l+ +
AP009044_0 180 ----------RETLGRVREVNARAADTVAALLQLANVDVR 209


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 3 0|=
-14 15 0|==
-13 48 2|*====
-12 144 69|======*=======
-11 324 361|============================== *
-10 531 671|================================================= *
-9 611 693|======================================================== *
-8 499 518|============================================== *
-7 375 327|=============================*=====
-6 216 188|=================*==
-5 131 103|=========*==
-4 69 55|====*==
-3 38 29|==*=
-2 16 15|=*
-1 11 8|*
0 6 4|*
1 3 2|*
2 1 1|*
3 0 0|
4 1 0|=
5 0 0|
> 6 10 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 148.5516
P(chi-square) = 2.945e-26

Total sequences searched: 3052

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: