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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Kocuria rhizophila DC2201  

Data for AP009152  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009152.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009152_2317 CDS_2654661-2653072 78.3 4.3e-22 1
AP009152_1834 CDS_2086105-2087577 74.8 4.2e-21 1
AP009152_0881 CDS_962008-963870 71.2 4.5e-20 1
AP009152_1875 CDS_2150575-2149382 70.6 6.8e-20 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009152_2317 1/1 280 348 .. 1 87 [] 78.3 4.3e-22
AP009152_1834 1/1 250 317 .. 1 87 [] 74.8 4.2e-21
AP009152_0881 1/1 304 371 .. 1 87 [] 71.2 4.5e-20
AP009152_1875 1/1 150 216 .. 1 87 [] 70.6 6.8e-20

Alignments of top-scoring domains:
AP009152_2317: domain 1 of 1, from 280 to 348: score 78.3, E = 4.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks f+++ HELRTPLt+I+gy+e+L++ + + ++eq
AP009152_2 280 QKSVFVSTTNHELRTPLTSISGYVEMLQD------GDFGSVGPEQ-- 318

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+++r +erl+ Li+dlL + ++++
AP009152_2 319 ----------ARVLEVVRRNTERLRLLIEDLLLINKLDQD 348

AP009152_1834: domain 1 of 1, from 250 to 317: score 74.8, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPL +Irgy+el + ++ +++e++
AP009152_1 250 KLRRFVADASHELRTPLVSIRGYSELYRHGA--------LQTPEDV- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i++e++r+ +L++dlL+l+r+++
AP009152_1 288 ----------GKAMDRIESESKRMTQLVEDLLTLARLDER 317

AP009152_0881: domain 1 of 1, from 304 to 371: score 71.2, E = 4.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++sHELRTPLt+++++ae+L + +++ ++
AP009152_0 304 MQQTFVSDVSHELRTPLTTVKMAAEVLYN-------AREDFDPVN-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e ++++++r +++++dlL++sr +ag
AP009152_0 342 ----------RRSAELLHHQVDRFDSMLSDLLEISRFDAG 371

AP009152_1875: domain 1 of 1, from 150 to 216: score 70.6, E = 6.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+++++e++++ ++ +ee +
AP009152_1 150 IRNDFVANVSHELKTPVGAVSLLSEAIED---------AAGDEESV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + +++re+ rl++L++d+ +lsr++
AP009152_1 187 ----------RHFAASLQRESMRLSALVQDIIELSRLQGT 216


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 7 0|=
-13 25 1|*===
-12 94 53|======*=====
-11 230 279|============================= *
-10 358 518|============================================= *
-9 471 535|==========================================================*
-8 435 400|=================================================*=====
-7 318 252|===============================*========
-6 199 145|==================*======
-5 109 79|=========*====
-4 53 42|=====*=
-3 25 22|==*=
-2 13 11|=*
-1 5 6|*
0 3 3|*
1 2 1|*
2 3 0|=
3 2 0|=
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 149.4617
P(chi-square) = 1.92e-26

Total sequences searched: 2357

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: