Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Nitratiruptor sp. SB155-2  

Data for AP009178  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009178.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009178_1346 CDS_1359067-1362201 102.8 4.1e-29 1
AP009178_1753 CDS_1774018-1772636 45.8 5.5e-13 1
AP009178_1289 CDS_1306670-1307842 37.6 1.2e-10 1
AP009178_0410 CDS_406910-405600 30.2 1.5e-08 1
AP009178_1833 CDS_1852616-1851462 28.5 4.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009178_1346 1/1 395 460 .. 1 87 [] 102.8 4.1e-29
AP009178_1753 1/1 245 312 .. 1 87 [] 45.8 5.5e-13
AP009178_1289 1/1 180 245 .. 1 87 [] 37.6 1.2e-10
AP009178_0410 1/1 214 280 .. 1 87 [] 30.2 1.5e-08
AP009178_1833 1/1 173 235 .. 1 87 [] 28.5 4.4e-08

Alignments of top-scoring domains:
AP009178_1346: domain 1 of 1, from 395 to 460: score 102.8, E = 4.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g+++lL++ tel++eq
AP009178_1 395 AKSMFLANMSHEIRTPLNGIIGFTDLLKN---------TELTPEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++++i++++e ll++in +Ldls+ie+
AP009178_1 431 ----------REFVNIIEKSSENLLEIINAILDLSKIESK 460

AP009178_1753: domain 1 of 1, from 245 to 312: score 45.8, E = 5.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sHE+++P++ I gya+ Ll+ +++++ +
AP009178_1 245 QRNDLISAVSHEFKNPVAIIHGYAQSLLD--------EPDMPKALQ- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i++++e ++ +i++l + e+
AP009178_1 283 ----------QRFIQKIYQASEKISYMIDRLALAMKFESS 312

AP009178_1289: domain 1 of 1, from 180 to 245: score 37.6, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ + HEL+TP+++I++++e+L++ + + +
AP009178_1 180 LLNNFIKDTTHELNTPVSTILTNVETLKD---------SSIDQKS-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i+ +a+ ++ + +dl l +
AP009178_1 216 ----------KRKIERIDIAARTISTIYEDLSYLLLRDKI 245

AP009178_0410: domain 1 of 1, from 214 to 280: score 30.2, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL+++++ e+ l ++s+e+
AP009178_0 214 YQKELFIGIAHELKTPLAVMKLKNEVTLI---------KKRSPEE-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y + ++ ++ ++ ++++i+++L + r e+
AP009178_0 250 ---------YIQTIKLNIKTINEMNKMIENVLKIGRQESD 280

AP009178_1833: domain 1 of 1, from 173 to 235: score 28.5, E = 4.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ + HE++TPL+ I +++l +++ +e
AP009178_1 173 TLDNFIKDSMHEINTPLSIINVNIDLFTRKF-------GE------- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl++i+++a+ l+++ nd+ l + +
AP009178_1 206 ----------NRYLSRIKSAAKTLSNIYNDMDYLIKKDRI 235


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 17 1|*==
-12 72 42|======*=====
-11 196 218|================================= *
-10 336 405|======================================================== *
-9 350 418|==========================================================*
-8 281 313|=============================================== *
-7 233 197|================================*======
-6 137 113|==================*====
-5 89 62|==========*====
-4 52 33|=====*===
-3 29 17|==*==
-2 13 9|=*=
-1 9 4|*=
0 7 2|*=
1 2 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 1 0|=
> 6 14 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 91.7561
P(chi-square) = 2.401e-15

Total sequences searched: 1857

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: