Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Sulfurovum sp. NBC37-1  

Data for AP009179  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009179.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009179_1904 CDS_1960625-1963822 104.8 1.4e-29 1
AP009179_0627 CDS_655272-656879 96.3 3.6e-27 1
AP009179_1857 CDS_1911055-1914525 94.6 1.1e-26 1
AP009179_1842 CDS_1896881-1893741 91.9 6.5e-26 1
AP009179_0758 CDS_777505-776000 90.4 1.7e-25 1
AP009179_1395 CDS_1444770-1442833 74.9 4.3e-21 1
AP009179_1066 CDS_1092448-1094529 73.0 1.4e-20 1
AP009179_0491 CDS_497661-498680 59.6 9e-17 2
AP009179_1834 CDS_1885566-1887428 55.9 1.1e-15 1
AP009179_2093 CDS_2175310-2174066 35.7 5.4e-10 1
AP009179_1391 CDS_1440256-1441419 35.4 6.4e-10 1
AP009179_0681 CDS_706792-707910 35.0 8.3e-10 1
AP009179_0963 CDS_982048-984072 32.9 3.5e-09 1
AP009179_1868 CDS_1925753-1924554 32.0 6.1e-09 1
AP009179_0623 CDS_653552-651501 31.1 1.1e-08 1
AP009179_1186 CDS_1216098-1217099 30.5 1.6e-08 1
AP009179_2460 CDS_2556108-2554495 30.5 1.7e-08 1
AP009179_0467 CDS_474559-473369 30.4 1.7e-08 1
AP009179_1143 CDS_1167895-1169550 28.0 8.1e-08 1
AP009179_0767 CDS_785537-784305 27.2 1.4e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009179_1904 1/1 414 479 .. 1 87 [] 104.8 1.4e-29
AP009179_0627 1/1 165 230 .. 1 87 [] 96.3 3.6e-27
AP009179_1857 1/1 791 856 .. 1 87 [] 94.6 1.1e-26
AP009179_1842 1/1 379 444 .. 1 87 [] 91.9 6.5e-26
AP009179_0758 1/1 125 190 .. 1 87 [] 90.4 1.7e-25
AP009179_1395 1/1 165 229 .. 1 87 [] 74.9 4.3e-21
AP009179_1066 1/1 465 531 .. 1 87 [] 73.0 1.4e-20
AP009179_0491 2/2 130 197 .. 1 87 [] 58.9 1.5e-16
AP009179_1834 1/1 133 199 .. 1 87 [] 55.9 1.1e-15
AP009179_2093 1/1 212 270 .. 1 87 [] 35.7 5.4e-10
AP009179_1391 1/1 178 241 .. 1 87 [] 35.4 6.4e-10
AP009179_0681 1/1 165 230 .. 1 87 [] 35.0 8.3e-10
AP009179_0963 1/1 454 524 .. 1 87 [] 32.9 3.5e-09
AP009179_1868 1/1 196 254 .. 1 87 [] 32.0 6.1e-09
AP009179_0623 1/1 207 272 .. 1 87 [] 31.1 1.1e-08
AP009179_1186 1/1 122 182 .. 1 81 [. 30.5 1.6e-08
AP009179_2460 1/1 313 383 .. 1 87 [] 30.5 1.7e-08
AP009179_0467 1/1 202 257 .. 1 87 [] 30.4 1.7e-08
AP009179_1143 1/1 330 392 .. 1 87 [] 28.0 8.1e-08
AP009179_0767 1/1 211 276 .. 1 87 [] 27.2 1.4e-07

Alignments of top-scoring domains:
AP009179_1904: domain 1 of 1, from 414 to 479: score 104.8, E = 1.4e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I g++e+L+ t+l++eq
AP009179_1 414 AKSLFLANMSHEIRTPLNGIVGFTEILRS---------TDLNDEQ-- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l++i++++e ll++in++Ldls+ie++
AP009179_1 450 ----------REFLSIIDKSSENLLSIINNILDLSKIESN 479

AP009179_0627: domain 1 of 1, from 165 to 230: score 96.3, E = 3.6e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+flan+sHE+RTPL+aI g+++lL+e e++e +
AP009179_0 165 QKSRFLANMSHEIRTPLNAITGFIKLLEE---------NEKDETK-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+++++++e+ll++ind+Ld+s+ie+g
AP009179_0 201 ----------LKYLKIVENSSESLLQIINDILDISKIESG 230

AP009179_1857: domain 1 of 1, from 791 to 856: score 94.6, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTPL+aI+g+++lL++ ++ +
AP009179_1 791 SKSEFLANMSHEIRTPLSAILGFIDLLKK---------ENIEKKA-- 826

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i+ +++ ll++i+d+Ld+s+ie+g
AP009179_1 827 ----------KEYVDIIDTSSKGLLKIIEDILDFSKIESG 856

AP009179_1842: domain 1 of 1, from 379 to 444: score 91.9, E = 6.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTPL++I g+++lL+ t+ +++q
AP009179_1 379 AKDLFLANMSHEIRTPLNGIVGFTQLLKS---------TNPTPDQ-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i+++++ ll+++nd+Ldls+i a
AP009179_1 415 ----------EEFITVIENSSDNLLAIVNDILDLSKIKAD 444

AP009179_0758: domain 1 of 1, from 125 to 190: score 90.4, E = 1.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+t+I+g++e L + e ++e
AP009179_0 125 TKSEFLANMSHEIRTPMTGILGFVEQLAK---------KENDPER-- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++++ ll++ind+Ldls+ie+g
AP009179_0 161 ----------LRQFNIITKSGQTLLSIINDILDLSKIESG 190

AP009179_1395: domain 1 of 1, from 165 to 229: score 74.9, E = 4.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef++++ H++RTP++a++g+++lL+e e +++q
AP009179_1 165 RKSEFFSSVIHDIRTPMNAVLGFLDLLKE----------EVDPKQ-- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++++++ae +Lind+Ld+ +i +g
AP009179_1 200 ----------VEYVQSAHKSAEMVIALINDVLDFNKISSG 229

AP009179_1066: domain 1 of 1, from 465 to 531: score 73.0, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f++++sHELRTPL++I+ +++ L ++ l+ +q
AP009179_1 465 AKSTFISHMSHELRTPLHTILSATQYLIG--------YEGLTIPQ-- 501

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ti+++a +ll +ind+Ldl +ieag
AP009179_1 502 ----------QEKIATIESSAGHLLGMINDILDLVQIEAG 531

AP009179_0491: domain 2 of 2, from 130 to 197: score 58.9, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++l++++HE+R+P+++I+gy+++L+e d++ + + +
AP009179_0 130 QRADMLSAIAHEFRNPIASIMGYSQTLQE--------DPDIPKPLQ- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++++ ++ +++L+++l + e+g
AP009179_0 168 ----------EKFLGKVYNNGQKIEDLLSRLILWNKFESG 197

AP009179_1834: domain 1 of 1, from 133 to 199: score 55.9, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++anlsHE+RT L+aI gy+ +L+e ++ ++
AP009179_1 133 TQERMIANLSHEMRTSLNAITGYLTILEE-------------SKALR 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + l+++ + ae+l++L+ d+L ++++ +g
AP009179_1 167 GEG-------KFHLKKAMNGAESLQSLVKDILNITKLNSG 199

AP009179_2093: domain 1 of 1, from 212 to 270: score 35.7, E = 5.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++n+ HEL+TP+t r ae+L++
AP009179_2 212 SKNLFMRNMMHELKTPITKGRIVAEMLED------------------ 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ r+ er+++Li++l + +r ++
AP009179_2 241 ----------EATKKILVRAFERMNELISELAEVERVTTQ 270

AP009179_1391: domain 1 of 1, from 178 to 241: score 35.4, E = 6.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HEL+TP+++I++++el+++ +++++++
AP009179_1 178 TMNRFIQDTTHELNTPVSTILTNLELIQT--------LHKCDAQEE- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i+ +++ l+r+ +d L++ ++ ++
AP009179_1 216 -------------MQRIEIASKTLSRIYDD-LTYLKLNHQ 241

AP009179_0681: domain 1 of 1, from 165 to 230: score 35.0, E = 8.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ + HEL+TPL++I++++e++ + + + e+
AP009179_0 165 LLDRFIKDTTHELNTPLSTILTNVEMMDT---------DVMVEKN-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i +a+ ++L dl l+ +++
AP009179_0 201 ----------KKKLNRINIAAKTVSQLYKDLTYLTLKQEQ 230

AP009179_0963: domain 1 of 1, from 454 to 524: score 32.9, E = 3.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ +++H+ ++PL+a+++y+e+++ ++ +e + +qr
AP009179_0 454 AMGEMMDAVAHQWKQPLNALSMYSEIIKSDF-------EEGTVDQR- 492

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ + i+ +++++ + +++++ + r +
AP009179_0 493 --------YVDEFSQNIQIQIDHMVDTLDEFRSFFRPNKE 524

AP009179_1868: domain 1 of 1, from 196 to 254: score 32.0, E = 6.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+ HEL+TP++aI+++++ L+ +e++
AP009179_1 196 SLNRFIADTTHELNTPVSAILMTVQSLKG-----------IDEKK-- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +a+rl+ + + l r+e
AP009179_1 230 -------------RKRLEASAKRLSVMYSSL--TYRLEGK 254

AP009179_0623: domain 1 of 1, from 207 to 272: score 31.1, E = 1.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ flan H++RTP +++ g++elL++ +l + +
AP009179_0 207 ETLSFLANTVHDIRTPANSLYGFLELLED----------HLEDRRL- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ ++++a+ +++L + +Ld + +
AP009179_0 243 ----------LQYIQNAKESAHFINDLTSSILDRISSQRE 272

AP009179_1186: domain 1 of 1, from 122 to 182: score 30.5, E = 1.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++++ +H++RTPLt I+g++e++++ + e +
AP009179_1 122 ELTWMVRSFAHDFRTPLTIIQGNIEAIED---------GLVANENI- 158

peLRledpeyreyletilreaerllrLindlLdl<-*
le+++ e++++++L++d+L +
AP009179_1 159 ----------PLVLEKVKYETHYMNELLSDVLLF 182

AP009179_2460: domain 1 of 1, from 313 to 383: score 30.5, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++n++H+ R+PL+ I ++ ++++ l+ + e+ eq+
AP009179_2 313 GMGSMISNIAHQWRQPLSRINSNITVMKM-----LLDSNEAQKEQL- 353

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l++i++ ++++++ i+d+L + +
AP009179_2 354 ----------TEKLNSIEENTQYMSDTIEDFLHFFHPNKQ 383

AP009179_0467: domain 1 of 1, from 202 to 257: score 30.4, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+++ HEL+TP++ r+++e+L +
AP009179_0 202 SRQLFLRAIMHELKTPIAKGRLMSEMLPD------------------ 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ erl+ Li+++ ++ie
AP009179_0 231 ----------EKSKARMHSIFERLNLLIDEF---AKIEKI 257

AP009179_1143: domain 1 of 1, from 330 to 392: score 28.0, E = 8.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ + HE++TPL++I++++++ + ++ +e
AP009179_1 330 AQDSFIKHSIHEINTPLAVIMMHIDMHKIKF-------GE------- 362

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i+ +++ + ++ +dl + + +
AP009179_1 363 ----------DKYLSQIEAASKMIANIYDDLSYMVKKDRF 392

AP009179_0767: domain 1 of 1, from 211 to 276: score 27.2, E = 1.4e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +++ + H+L+ P++ +++ ++ L + + s++++
AP009179_0 211 KKHDMFKEITHQLKSPIAIMQARLSSLAN----------DTSPDTV- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ ++e + ++i+d+L l+ e
AP009179_0 247 ----------KEYVKETNTDIEGIKEIIQDILFLEGVELD 276


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 30 1|*===
-12 116 55|======*========
-11 300 289|====================================*=
-10 437 536|======================================================= *
-9 469 553|==========================================================*
-8 397 414|================================================== *
-7 271 261|================================*=
-6 163 150|==================*==
-5 89 82|==========*=
-4 60 44|=====*==
-3 36 23|==*==
-2 18 12|=*=
-1 11 6|*=
0 3 3|*
1 2 1|*
2 1 0|=
3 1 0|=
4 0 0|
> 5 30 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 118.2288
P(chi-square) = 4.116e-20

Total sequences searched: 2466

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: