Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Candidatus Vesicomyosocius okutanii HA  

Data for AP009247  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009247.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009247_0329 CDS_350238-348076 30.5 6e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009247_0329 1/1 499 571 .. 1 87 [] 30.5 6e-09

Alignments of top-scoring domains:
AP009247_0329: domain 1 of 1, from 499 to 571: score 30.5, E = 6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e + ++HE+++PLt I++ a+ L++++ l + + ++ + +
AP009247_0 499 AWGEVAKRMAHEIKNPLTPILLSAQRLRNRF---LISLEGKDLDVI- 541

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++++++++++++ + d++ +
AP009247_0 542 ----------DKTTNTIIHQVQSMDAMLSAFADYANTPQV 571


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-13 16 0|====
-12 47 21|=====*======
-11 122 111|===========================*===
-10 206 206|===================================================*
-9 162 212|========================================= *
-8 143 159|==================================== *
-7 99 100|========================*
-6 42 57|=========== *
-5 32 31|=======*
-4 31 16|===*====
-3 12 8|=*=
-2 17 4|*====
-1 4 2|*
0 0 1|*
1 1 0|=
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 62.4085
P(chi-square) = 4.593e-10

Total sequences searched: 939

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: