Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Bifidobacterium adolescentis ATCC 15703  

Data for AP009256  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009256.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009256_0569 CDS_710148-711929 73.8 5.8e-21 1
AP009256_0665 CDS_832185-831109 66.7 5.9e-19 1
AP009256_0276 CDS_367254-368663 55.6 8.2e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009256_0569 1/1 288 357 .. 1 87 [] 73.8 5.8e-21
AP009256_0665 1/1 131 195 .. 1 87 [] 66.7 5.9e-19
AP009256_0276 1/1 192 258 .. 1 87 [] 55.6 8.2e-16

Alignments of top-scoring domains:
AP009256_0569: domain 1 of 1, from 288 to 357: score 73.8, E = 5.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTPL+aI gyael ++ ++d + e +
AP009256_0 288 KMKRFVSDASHELRTPLAAIHGYAELYKM------QRDMPGALERA- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e i+ ++ r+ L++dlL l+r+++g
AP009256_0 328 ----------DESIEHIEASSARMTVLVEDLLSLARLDEG 357

AP009256_0665: domain 1 of 1, from 131 to 195: score 66.7, E = 5.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++a+++++e + +++ e ++
AP009256_0 131 MRRDMVANVSHELRTPVSALQAMVENMADGV-------VEPTPSN-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+il++++rl++Li lLdlsr+eag
AP009256_0 169 -------------LESILNQTHRLSDLIAFLLDLSRMEAG 195

AP009256_0276: domain 1 of 1, from 192 to 258: score 55.6, E = 8.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHEL+TP aI+++ae++ + ++ +++ +
AP009256_0 192 MRRDFVTNVSHELKTPAGAISLLAETIGD---------AADDPDAV- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i +e+erl +L+ +l dl ++++
AP009256_0 229 ----------KYFSGRISKESERLTELVHRLIDLQKAQSA 258


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 4 0|=
-13 10 1|*=
-12 50 37|======*==
-11 171 193|============================= *
-10 248 358|========================================== *
-9 345 370|==========================================================*
-8 280 277|==============================================*
-7 201 174|============================*=====
-6 145 100|================*========
-5 85 55|=========*=====
-4 37 29|====*==
-3 22 15|==*=
-2 10 8|=*
-1 14 4|*==
0 1 2|*
1 2 1|*
> 2 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 87.4344
P(chi-square) = 1.725e-14

Total sequences searched: 1631

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: