hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP009256.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009256_0654 CDS_817165-818691 129.2 5.8e-37 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009256_0654 1/1 305 388 .. 1 94 [] 129.2 5.8e-37
Alignments of top-scoring domains:
AP009256_0654: domain 1 of 1, from 305 to 388: score 129.2, E = 5.8e-37
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ +S+LLrLQark+k+eev ++ L+E+q+RV++
AP009256_0 305 EIHHRVKNNLQAVSALLRLQARKTKSEEV-----KKELKEAQRRVQT 346
mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L+++ d + vd + ++++L++ ++++ ++++i+ +
AP009256_0 347 IAMVHEGLSQTAD-EIVDYDKVISNLLKMAVDLATMRDQHID----V 388
Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 6 0|=
-13 18 10|=*=
-12 80 107|============ *
-11 379 298|==========================================*============
-10 361 386|==================================================== *
-9 279 326|======================================== *
-8 212 218|===============================*
-7 113 129|================= *
-6 90 72|==========*==
-5 48 38|=====*=
-4 20 20|==*
-3 11 10|=*
-2 4 5|*
-1 6 2|*
0 2 1|*
> 1 2 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 51.8680
P(chi-square) = 1.207e-07
Total sequences searched: 1631
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
