Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Porphyromonas gingivalis ATCC 33277  

Data for AP009380  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009380.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009380_1768 CDS_1984838-1981953 61.1 2.8e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009380_1768 1/1 426 493 .. 1 87 [] 61.1 2.8e-17

Alignments of top-scoring domains:
AP009380_1768: domain 1 of 1, from 426 to 493: score 61.1, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s f+ ++ HE+RTP+t+I+g+ e + +++l + +r
AP009380_1 426 LRSGFFTGITHEFRTPITVIQGLNEKMSS--------SPDLQASDR- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i+r++ ++l+L+n+lLd+ +i++g
AP009380_1 464 ----------TELHKIIDRQSSHMLNLVNQLLDICKIRSG 493


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 24 0|===
-13 58 1|*=======
-12 109 47|=====*========
-11 230 247|============================= *
-10 344 459|=========================================== *
-9 447 474|======================================================== *
-8 290 355|===================================== *
-7 220 223|===========================*
-6 158 128|===============*====
-5 96 70|========*===
-4 41 37|====*=
-3 29 19|==*=
-2 14 10|=*
-1 13 5|*=
0 7 2|*
1 2 1|*
2 2 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 153.9850
P(chi-square) = 2.283e-27

Total sequences searched: 2090

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: