hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: AP009380.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 6 0|=
-14 36 0|=====
-13 56 13|=*=====
-12 133 137|=================*
-11 418 382|===============================================*=====
-10 440 494|======================================================= *
-9 349 417|============================================ *
-8 241 280|=============================== *
-7 165 166|====================*
-6 137 92|===========*======
-5 43 49|======*
-4 33 26|===*=
-3 13 13|=*
-2 10 7|*=
-1 4 3|*
0 4 1|*
1 2 1|*
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 191.9609
P(chi-square) = 3.45e-35
Total sequences searched: 2090
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
