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Classification of phyla is from NCBI page
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4 accessions found for Burkholderia multivorans ATCC 17616  

Data for AP009385  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009385.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009385_1206 CDS_1316262-1317581 92.9 4.3e-26 1
AP009385_2557 CDS_2811572-2813119 67.3 7.7e-19 1
AP009385_2219 CDS_2436995-2434140 65.4 2.6e-18 1
AP009385_2088 CDS_2292190-2291048 61.1 4.5e-17 1
AP009385_0888 CDS_978435-979856 57.5 4.7e-16 1
AP009385_2525 CDS_2779365-2778019 56.0 1.2e-15 1
AP009385_3123 CDS_3443466-3444947 55.5 1.7e-15 1
AP009385_2315 CDS_2550065-2548749 52.6 1.1e-14 1
AP009385_0037 CDS_35755-37122 47.4 3.4e-13 1
AP009385_2079 CDS_2277499-2280015 40.9 2.3e-11 1
AP009385_1879 CDS_2059660-2061021 40.7 2.7e-11 1
AP009385_0110 CDS_118062-120464 38.2 1.4e-10 1
AP009385_2768 CDS_3050650-3048644 34.4 1.6e-09 1
AP009385_0138 CDS_150669-152072 27.1 1.9e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009385_1206 1/1 206 272 .. 1 87 [] 92.9 4.3e-26
AP009385_2557 1/1 281 346 .. 1 87 [] 67.3 7.7e-19
AP009385_2219 1/1 678 756 .. 1 87 [] 65.4 2.6e-18
AP009385_2088 1/1 152 220 .. 1 87 [] 61.1 4.5e-17
AP009385_0888 1/1 252 318 .. 1 87 [] 57.5 4.7e-16
AP009385_2525 1/1 213 278 .. 1 87 [] 56.0 1.2e-15
AP009385_3123 1/1 239 304 .. 1 87 [] 55.5 1.7e-15
AP009385_2315 1/1 220 278 .. 1 87 [] 52.6 1.1e-14
AP009385_0037 1/1 235 301 .. 1 87 [] 47.4 3.4e-13
AP009385_2079 1/1 588 658 .. 1 87 [] 40.9 2.3e-11
AP009385_1879 1/1 234 293 .. 1 87 [] 40.7 2.7e-11
AP009385_0110 1/1 524 596 .. 1 87 [] 38.2 1.4e-10
AP009385_2768 1/1 419 481 .. 1 81 [. 34.4 1.6e-09
AP009385_0138 1/1 201 270 .. 1 87 [] 27.1 1.9e-07

Alignments of top-scoring domains:
AP009385_1206: domain 1 of 1, from 206 to 272: score 92.9, E = 4.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+++e +l+ee+r
AP009385_1 206 MRRDFVANVSHELKTPLTVLSGFLETMRE---------LPLGEEDR- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle ++++a r+++++ dlL l+++e +
AP009385_1 243 ----------ARYLEMMEQQASRMRHIVTDLLVLAKLEGE 272

AP009385_2557: domain 1 of 1, from 281 to 346: score 67.3, E = 7.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ae +l+ ++ +++
AP009385_2 281 LQKRFIADAAHQMKTPLAGLRTQAEFALR---------HPVPPDV-- 316

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i ++e+ rL+ +lL l+r+e+
AP009385_2 317 ----------QRSLEQIATSSEQAARLVTQLLALARAENR 346

AP009385_2219: domain 1 of 1, from 678 to 756: score 65.4, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+I g++++L + g++++s +++
AP009385_2 678 LRNSLLSAISHDLRTPLTTIVGFSSMLAN-------GRAAASFGDAA 717

peLR....ledpeyreyletilreaerllrLindlLdlsrieag<-*
++R +++ e+++ i++ea r+ ++ +lLd++r++ag
AP009385_2 718 AAARlaqrE-----GELVDAIHDEALRMTGIVTNLLDMARLQAG 756

AP009385_2088: domain 1 of 1, from 152 to 220: score 61.1, E = 4.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++nl+HE+++PL +Irg+a+lL+ el +e+ ++
AP009385_2 152 VNKQLIRNLAHEIKNPLGGIRGAAQLLEFEL-------GERERGEL- 190

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
AP009385_2 191 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 220

AP009385_0888: domain 1 of 1, from 252 to 318: score 57.5, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HELRTP+t + + +e++l + +s+e+
AP009385_0 252 QLANFSADIAHELRTPVTNLTTQTEVALG---------QSRSAEE-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre l + l+e r++r+i d+L l++ e+
AP009385_0 288 ---------YREVLYSNLEEFGRMSRMIGDMLFLAQTEND 318

AP009385_2525: domain 1 of 1, from 213 to 278: score 56.0, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+a++ a+l + ++ ++
AP009385_2 213 TQKAFVADAAHELRTPLAAVQIQAQLVAR---------AKDDAAR-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ +++ + r rL ++lL l+r+e
AP009385_2 249 ----------REALDDLQHGVTRATRLAEQLLALARAEPD 278

AP009385_3123: domain 1 of 1, from 239 to 304: score 55.5, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+LRTPLta++++ae + +++ +q+
AP009385_3 239 AQRKFIADAAHQLRTPLTAVKLHAEQAAV----------ARDTQQT- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++ +a+r rL n+lL l+r+e g
AP009385_3 275 ----------YAALRELRAAADRAVRLSNQLLSLARAEPG 304

AP009385_2315: domain 1 of 1, from 220 to 278: score 52.6, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la+++H+LRTPL+ +r+ ae++ +
AP009385_2 220 DRAVMLAGVAHDLRTPLARMRLRAEMMDD------------------ 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + r+++++ ++++++L ++ +a
AP009385_2 249 ----------ARLRDGVVRDVDSMTHIVDQFLVFAHGGAD 278

AP009385_0037: domain 1 of 1, from 235 to 301: score 47.4, E = 3.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++H+LRTP++++ + ++ ++ ++ ++
AP009385_0 235 TQRRFIADAAHQLRTPIAVLDTQIQYAQQ---------RGNDDREL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++++r+++ + + + lL l+ +ea
AP009385_0 272 ----------ASVLDSMQRSSRKMADVTDKLLLLAHAEAT 301

AP009385_2079: domain 1 of 1, from 588 to 658: score 40.9, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++++HEL++PL+aI y++ l+ l +++ ++e +
AP009385_2 588 TMGEMASSIAHELNQPLAAINNYCSGTLA-----LVKSGRGTPEML- 628

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+ ++a r ++ +++++ + ++
AP009385_2 629 ----------QPALEKTAQQALRAGMIVKRIREFVKRSEP 658

AP009385_1879: domain 1 of 1, from 234 to 293: score 40.7, E = 2.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
AP009385_1 234 DRALMLAGISHDLRTPLARLRLETEMSPSD----------------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++e+++r+i + d++r +
AP009385_1 264 ----------QATKDAMVDDIEQMDRIIAAFIDYARPTQR 293

AP009385_0110: domain 1 of 1, from 524 to 596: score 38.2, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l + + ++ +++ +
AP009385_0 524 AWGEVARRLAHEIKNPLTPIQLSAERLQMKL---SDKLAPHDADVL- 566

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i +++ + r+++d+++++r
AP009385_0 567 ----------KRGATMIVNQVAAMKRMVDDFREYARTPPA 596

AP009385_2768: domain 1 of 1, from 419 to 481: score 34.4, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r +++ + +++e+ ++
AP009385_2 419 ALGQMAAGITHELNQPLAALRSFSDNTRV--------LLDRGEQAAA 457

peLRledpeyreyletilreaerllrLindlLdl<-*
re le i +er+ ++ n+l +
AP009385_2 458 ----------RENLEAIAALTERMGKITNQLKLF 481

AP009385_0138: domain 1 of 1, from 201 to 270: score 27.1, E = 1.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ +a+++HE+ TPL++I ++ae L++ ++++++ ++
AP009385_0 201 ALGVQAATVAHEMGTPLSTIAMLAEELRD---------AARDDPGLA 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l++++++ + + + +l+ + + a
AP009385_0 239 RY--------EADLKVLEEQMMLCTSALARLRSRASAPAS 270


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 7 0|=
-13 26 2|*==
-12 113 70|======*=====
-11 287 365|============================= *
-10 490 678|================================================= *
-9 576 700|==========================================================*
-8 582 524|====================================================*======
-7 404 330|================================*========
-6 258 190|==================*=======
-5 147 104|==========*====
-4 84 55|=====*===
-3 40 29|==*=
-2 26 15|=*=
-1 14 8|*=
0 10 4|*
1 3 2|*
2 1 1|*
3 0 0|
> 4 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 210.6059
P(chi-square) = 8.821e-309

Total sequences searched: 3127

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: