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Classification of phyla is from NCBI page
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4 accessions found for Burkholderia multivorans ATCC 17616  

Data for AP009386  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009386.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009386_0108 CDS_104774-107779 88.4 5.5e-25 1
AP009386_0105 CDS_100295-103384 80.3 1.1e-22 1
AP009386_1064 CDS_1195106-1197070 68.5 2.4e-19 1
AP009386_0993 CDS_1112681-1111224 67.2 5.8e-19 1
AP009386_0967 CDS_1082869-1084299 61.2 2.8e-17 1
AP009386_1642 CDS_1850990-1849860 60.1 5.7e-17 1
AP009386_0624 CDS_668458-664802 58.0 2.2e-16 1
AP009386_2129 CDS_2416868-2421010 55.5 1.2e-15 1
AP009386_1630 CDS_1832949-1834319 54.5 2.2e-15 1
AP009386_0102 CDS_98231-96426 51.4 1.7e-14 1
AP009386_0625 CDS_669021-670601 51.2 2e-14 1
AP009386_0955 CDS_1068544-1067459 45.4 8.5e-13 1
AP009386_1604 CDS_1795888-1797672 42.4 5.8e-12 1
AP009386_0427 CDS_462235-461459 41.2 1.3e-11 1
AP009386_1638 CDS_1846532-1844475 35.5 5.3e-10 1
AP009386_0224 CDS_240882-239473 30.8 1.2e-08 1
AP009386_1934 CDS_2193795-2195678 30.0 1.9e-08 1
AP009386_2154 CDS_2462632-2464908 27.3 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009386_0108 1/1 519 584 .. 1 87 [] 88.4 5.5e-25
AP009386_0105 1/1 518 583 .. 1 87 [] 80.3 1.1e-22
AP009386_1064 1/1 277 342 .. 1 87 [] 68.5 2.4e-19
AP009386_0993 1/1 234 301 .. 1 87 [] 67.2 5.8e-19
AP009386_0967 1/1 247 312 .. 1 87 [] 61.2 2.8e-17
AP009386_1642 1/1 161 226 .. 1 87 [] 60.1 5.7e-17
AP009386_0624 1/1 846 917 .. 1 87 [] 58.0 2.2e-16
AP009386_2129 1/1 1019 1087 .. 1 87 [] 55.5 1.2e-15
AP009386_1630 1/1 233 298 .. 1 87 [] 54.5 2.2e-15
AP009386_0102 1/1 235 300 .. 1 87 [] 51.4 1.7e-14
AP009386_0625 1/1 163 229 .. 1 87 [] 51.2 2e-14
AP009386_0955 1/1 134 198 .. 1 87 [] 45.4 8.5e-13
AP009386_1604 1/1 230 295 .. 1 87 [] 42.4 5.8e-12
AP009386_0427 1/1 27 94 .. 1 87 [] 41.2 1.3e-11
AP009386_1638 1/1 449 521 .. 1 87 [] 35.5 5.3e-10
AP009386_0224 1/1 241 298 .. 1 79 [. 30.8 1.2e-08
AP009386_1934 1/1 398 466 .. 1 87 [] 30.0 1.9e-08
AP009386_2154 1/1 387 451 .. 1 87 [] 27.3 1.2e-07

Alignments of top-scoring domains:
AP009386_0108: domain 1 of 1, from 519 to 584: score 88.4, E = 5.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI g++el+ + ++l + +
AP009386_0 519 AKSTFLATMSHEIRTPLNAIVGNLELMAR---------APLAPTE-- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti ++++ llr+i+d+Ldls++e++
AP009386_0 555 ----------RRRLDTIASSSDALLRIIDDVLDLSKAESN 584

AP009386_0105: domain 1 of 1, from 518 to 583: score 80.3, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g++elL++ ++l+ +q
AP009386_0 518 AKSSFLAAMSHEIRTPLNVILGNLELLER---------STLDLPQ-- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++t++++a ll+L++ +Ld+++ eag
AP009386_0 554 ----------RSRVQTLRNAASGLLELVSGILDFTKVEAG 583

AP009386_1064: domain 1 of 1, from 277 to 342: score 68.5, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L+ +
AP009386_1 277 LKDELLATVSHELRTPLNVIYGWVEVLRS---------VDGQGFA-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ dlLd s + +g
AP009386_1 313 ----------QQAVDAIDRSARSLARMVGDLLDASSLATG 342

AP009386_0993: domain 1 of 1, from 234 to 301: score 67.2, E = 5.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP++ ++g ++++l+ + ++s++ +
AP009386_0 234 RLEAFNADVAHELRTPVSILIGQTQVALT--------SRDRSADRL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e erl+ +ind+L lsr + g
AP009386_0 272 ----------RQTLQSNLEEFERLRVIINDMLFLSRSDRG 301

AP009386_0967: domain 1 of 1, from 247 to 312: score 61.2, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a+++ +el+l+ ++ +
AP009386_0 247 ARRRFFADAAHQLKTPLAAVQAGVELALR---------PDEQPRV-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+++
AP009386_0 283 ----------NVHLRRVNGAVRQAAKIVQQLLSLSRLDSD 312

AP009386_1642: domain 1 of 1, from 161 to 226: score 60.1, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L+e + se +
AP009386_1 161 AQRDLTNGISHELRTPLARVRFALEMLRE----------PGSEAE-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +l++i +++ l++Li+ L+++r+e
AP009386_1 196 ---------YRSALDSIAQDVTELDELIDMSLTYARLEYS 226

AP009386_0624: domain 1 of 1, from 846 to 917: score 58.0, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla +sHELR PL++I+ a +L + + +++ ++eq+
AP009386_0 846 AKDNFLALVSHELRAPLNVISSWAAVLMT-----ASERGMPTDEQMS 887

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ tilr + +Li+dlLd sri +g
AP009386_0 888 ----------QRAVTTILRHCQLQAELIDDLLDVSRISSG 917

AP009386_2129: domain 1 of 1, from 1019 to 1087: score 55.5, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a lsHELR PL+ I ae+L + l++ + ++
AP009386_2 1019 LKDEFIAVLSHELRHPLNLIGVRAEMLPR-----LPETRDIPAVR-- 1058

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e i+++++ ++i+dlLdlsri++g
AP009386_2 1059 -----------EAAELIRQAVRAQAQIIDDLLDLSRIRTG 1087

AP009386_1630: domain 1 of 1, from 233 to 298: score 54.5, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ ++++++r
AP009386_1 233 LQRHFIADAAHELRTPIMGLSIQSQLLRR----------AATADER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl +L ++lL+l+r e
AP009386_1 269 ----------ERILAQIHAGTTRLGHLAEQLLTLARVEPD 298

AP009386_0102: domain 1 of 1, from 235 to 300: score 51.4, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
AP009386_0 235 AKNAFLGMVSHELRTPLQAICGSIEILLA---------RPQSDAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ dl d+ ++++
AP009386_0 271 ----------LKTIRRLQNSAASLEALVKDLTDYIKLRST 300

AP009386_0625: domain 1 of 1, from 163 to 229: score 51.2, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+a++sHELR P taI+g a++L + ++ ++ +
AP009386_0 163 SKDAFIAAVSHELRAPSTAILGWADMLGD---------AADDAAVV- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i+r + l rL++dlLd sr+++g
AP009386_0 200 ----------REGVAVIRRNILALTRLVDDLLDASRLGQG 229

AP009386_0955: domain 1 of 1, from 134 to 198: score 45.4, E = 8.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t++rg ++ L e + ++ +
AP009386_0 134 EQAFWNAAIAHELRTPVTVLRGRLQGLAE---------GVFTPSE-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l ++e l+rLi+dl+ s +++g
AP009386_0 170 -----------SLYRSLLAQVEGLSRLIEDLRVVSLADSG 198

AP009386_1604: domain 1 of 1, from 230 to 295: score 42.4, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sH+LR+P +a+ ++ +L+ +++++
AP009386_1 230 AKSRLLAAASHDLRQPSHALGVLVGALRG---------VPMPDDG-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +++ l+ L lLd sr++ag
AP009386_1 266 ----------QRLLQQIELSTRALDTLFGALLDVSRLDAG 295

AP009386_0427: domain 1 of 1, from 27 to 94: score 41.2, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LR PL+a+ +L+++l +++++
AP009386_0 27 LRDQALSTASHDLRSPLNAMHSWGYVLERQL-------ANADPNL-- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ +e+ +Li+d+Ld r+e+
AP009386_0 65 ----------QRALAGIRTGIEQQVKLIDDVLDAPRAETR 94

AP009386_1638: domain 1 of 1, from 449 to 521: score 35.5, E = 5.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+a y+ ++l+ + gd++l++ +
AP009386_1 449 TMGEMASALAHELNQPLAAANSYCTAALN----LMTGDAPLDDAGGP 491

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + ++++er ++i+++ ++ r ++
AP009386_1 492 ----------RELLAKGRHQVERAGQIIRRVQQFVRKTTP 521

AP009386_0224: domain 1 of 1, from 241 to 298: score 30.8, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPL+ + + +elL ++ ++ +
AP009386_0 241 AMQRFIADAAHQMRTPLARLDAQIELLDG---------DDDPARH-- 276

peLRledpeyreyletilreaerllrLindlL<-*
+ l+ ++ rL +lL
AP009386_0 277 ----------AARLDALRATCADVGRLTGQLL 298

AP009386_1934: domain 1 of 1, from 398 to 466: score 30.0, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ +++++
AP009386_1 398 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RDQPAQA-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i + ++ + L +l +++r
AP009386_1 437 ----------FANLERIGKLVDGMAVLTGELKTFARKPDV 466

AP009386_2154: domain 1 of 1, from 387 to 451: score 27.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ L I+ +++++++ +++e++
AP009386_2 387 ALGNLVGSVAHDFNNLLMIISSNVQIMRR-----------RNAEHL- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+r+++ ++L ++lL +r +
AP009386_2 422 ----------DKELGAIERALKNGQSLTRQLLGVARKQPL 451


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 8 0|=
-13 13 1|*=
-12 63 48|=====*==
-11 187 252|======================== *
-10 345 468|============================================ *
-9 424 483|===================================================== *
-8 404 362|=============================================*=====
-7 292 228|============================*========
-6 174 131|================*=====
-5 96 72|========*===
-4 39 38|====*
-3 33 20|==*==
-2 13 10|=*
-1 6 5|*
0 3 2|*
1 2 1|*
2 3 0|=
> 3 25 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 113.8977
P(chi-square) = 3.043e-19

Total sequences searched: 2159

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: