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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia multivorans ATCC 17616  

Data for AP009387  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: AP009387.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
AP009387_0597 CDS_675451-677733 73.5 3.4e-21 1
AP009387_0685 CDS_776507-774204 72.1 8.8e-21 1
AP009387_0777 CDS_878573-877056 67.6 1.6e-19 1
AP009387_0298 CDS_339675-341054 67.5 1.8e-19 1
AP009387_0701 CDS_793830-795416 50.7 9.9e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AP009387_0597 1/1 358 422 .. 1 87 [] 73.5 3.4e-21
AP009387_0685 1/1 393 458 .. 1 87 [] 72.1 8.8e-21
AP009387_0777 1/1 267 335 .. 1 87 [] 67.6 1.6e-19
AP009387_0298 1/1 233 298 .. 1 87 [] 67.5 1.8e-19
AP009387_0701 1/1 158 224 .. 1 87 [] 50.7 9.9e-15

Alignments of top-scoring domains:
AP009387_0597: domain 1 of 1, from 358 to 422: score 73.5, E = 3.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla l HELR+PLt I++++el + +++++++ +
AP009387_0 358 AKDQFLAVLGHELRNPLTPISLALELVRS-------REGHATPNE-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+r+++++ rLi+dlLd sri g
AP009387_0 396 -------------IAIIQRQLDHMVRLIDDLLDVSRITRG 422

AP009387_0685: domain 1 of 1, from 393 to 458: score 72.1, E = 8.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + ++
AP009387_0 393 LKDELLATVSHELRTPLNVIYGWIEVLRN---------SGDDALR-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+r+a++l r++ d+Ld s + +g
AP009387_0 429 ----------VQAIDAIDRSARSLTRMVGDILDASSLSTG 458

AP009387_0777: domain 1 of 1, from 267 to 335: score 67.6, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L ++ ++l e++r
AP009387_0 267 QRRELIANISHDLRTPLTSLHGYLETLSLKA-------DTLAEPDR- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
AP009387_0 306 ----------RRYLSIALAQSAKVGRLAQALFELARLESG 335

AP009387_0298: domain 1 of 1, from 233 to 298: score 67.5, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTP++a+++ a+++l+ e+++e r
AP009387_0 233 AERRFTADAAHELRTPIAAVKAQAQVALA----------ERDDERR- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +l+ +r rL+++lL lsr+++g
AP009387_0 269 ----------LHALRGVLEGCDRAARLVDQLLLLSRLDSG 298

AP009387_0701: domain 1 of 1, from 158 to 224: score 50.7, E = 9.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r + +L+ + +++ +
AP009387_0 158 RLSVFIAMLAHELRNHLAPLRHSVGVLQS---------LPDPAPAL- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++ +l rL++dlLd ri +g
AP009387_0 195 ----------AQCRDAVHRQVAQLTRLVDDLLDVGRITSG 224


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 3 0|=
-13 6 0|==
-12 18 17|=====*
-11 66 90|====================== *
-10 122 168|========================================= *
-9 162 174|====================================================== *
-8 130 130|===========================================*
-7 118 82|===========================*============
-6 51 47|===============*=
-5 44 25|========*======
-4 18 13|====*=
-3 12 7|==*=
-2 4 3|*=
-1 5 2|*=
0 0 1|*
1 2 0|=
2 0 0|
> 3 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 53.2446
P(chi-square) = 2.627e-08

Total sequences searched: 806

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: